RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 DNAJC10Q8IXB1 793 aa16.62■□□□□ 0.25
SGCA-202ENST00000344627 TTC5Q8N0Z6 440 aa16.62■□□□□ 0.25
SGCA-202ENST00000344627 KDM2BQ8NHM5 1336 aa16.61■□□□□ 0.25
SGCA-202ENST00000344627 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
SGCA-202ENST00000344627 KIAA1551Q9HCM1 1747 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 GNAT3A8MTJ3 354 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 U2AF1L5P0DN76 240 aaPredicted RBP16.6■□□□□ 0.25
SGCA-202ENST00000344627 PPP2R1AP30153 589 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 U2AF1Q01081 240 aaKnown RBP eCLIP16.6■□□□□ 0.25
SGCA-202ENST00000344627 DDR1Q08345 913 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 TEFQ10587 303 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 USPL1Q5W0Q7 1092 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 SRP68Q9UHB9 627 aaKnown RBP16.6■□□□□ 0.25
SGCA-202ENST00000344627 COL15A1P39059 1388 aa16.6■□□□□ 0.25
SGCA-202ENST00000344627 PRKAR2BP31323 418 aa16.59■□□□□ 0.25
SGCA-202ENST00000344627 TJP1Q07157 1748 aa16.59■□□□□ 0.25
SGCA-202ENST00000344627 FSTL1Q12841 308 aa16.58■□□□□ 0.24
SGCA-202ENST00000344627 C9orf131Q5VYM1 1079 aa16.58■□□□□ 0.24
SGCA-202ENST00000344627 C16orf71Q8IYS4 520 aaPredicted RBP16.58■□□□□ 0.24
SGCA-202ENST00000344627 RBM46Q8TBY0 533 aaKnown RBP16.58■□□□□ 0.24
SGCA-202ENST00000344627 ADAMTS7Q9UKP4 1686 aa16.58■□□□□ 0.24
SGCA-202ENST00000344627 NPM2Q86SE8 214 aaKnown RBP16.57■□□□□ 0.24
SGCA-202ENST00000344627 KCPQ6ZWJ8 1503 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 CEP350Q5VT06 3117 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 EIF5P55010 431 aaKnown RBP16.56■□□□□ 0.24
SGCA-202ENST00000344627 NFIXQ14938 502 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 ZNF790Q6PG37 636 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 IL17REQ8NFR9 667 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 ZBTB1Q9Y2K1 713 aa16.56■□□□□ 0.24
SGCA-202ENST00000344627 ARFGEF1Q9Y6D6 1849 aa16.55■□□□□ 0.24
SGCA-202ENST00000344627 SERPINB2P05120 415 aa16.55■□□□□ 0.24
SGCA-202ENST00000344627 IL6STP40189 918 aaPredicted RBP16.55■□□□□ 0.24
SGCA-202ENST00000344627 IFFO2Q5TF58 517 aa16.55■□□□□ 0.24
SGCA-202ENST00000344627 RTF1Q92541 710 aaKnown RBP16.55■□□□□ 0.24
SGCA-202ENST00000344627 PHACTR3Q96KR7 559 aa16.55■□□□□ 0.24
SGCA-202ENST00000344627 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
SGCA-202ENST00000344627 N4BP2Q86UW6 1770 aaPredicted RBP16.55■□□□□ 0.24
SGCA-202ENST00000344627 HEG1Q9ULI3 1381 aa16.54■□□□□ 0.24
SGCA-202ENST00000344627 H0YIN7 160 aa16.54■□□□□ 0.24
SGCA-202ENST00000344627 CANXP27824 592 aaKnown RBP16.54■□□□□ 0.24
SGCA-202ENST00000344627 TTLL6Q8N841 843 aa16.54■□□□□ 0.24
SGCA-202ENST00000344627 FMNL2Q96PY5 1086 aa16.54■□□□□ 0.24
SGCA-202ENST00000344627 RNF181Q9P0P0 153 aa16.54■□□□□ 0.24
SGCA-202ENST00000344627 BRCA1P38398 1863 aaKnown RBP16.54■□□□□ 0.24
SGCA-202ENST00000344627 RGL2O15211 777 aa16.53■□□□□ 0.24
SGCA-202ENST00000344627 PDE6BP35913 854 aa16.53■□□□□ 0.24
SGCA-202ENST00000344627 CEMIPQ8WUJ3 1361 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 NEFMP07197 916 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 LMNB1P20700 586 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 CHRNA5P30532 468 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 BRIP1Q9BX63 1249 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 BCL2L12Q9HB09 334 aa16.52■□□□□ 0.24
SGCA-202ENST00000344627 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
SGCA-202ENST00000344627 BTBD11A6QL63 1104 aa16.51■□□□□ 0.23
SGCA-202ENST00000344627 ZNF496Q96IT1 587 aaPredicted RBP16.51■□□□□ 0.23
SGCA-202ENST00000344627 NMRK2Q9NPI5 230 aa16.51■□□□□ 0.23
SGCA-202ENST00000344627 HTATSF1O43719 755 aaKnown RBP16.5■□□□□ 0.23
SGCA-202ENST00000344627 C2CD5Q86YS7 1000 aa16.5■□□□□ 0.23
SGCA-202ENST00000344627 NRXN2Q9P2S2 1712 aa16.5■□□□□ 0.23
SGCA-202ENST00000344627 CARMIL3Q8ND23 1372 aa16.5■□□□□ 0.23
SGCA-202ENST00000344627 UBR2Q8IWV8 1755 aa16.49■□□□□ 0.23
SGCA-202ENST00000344627 SOGA3Q5TF21 947 aa16.49■□□□□ 0.23
SGCA-202ENST00000344627 CLEC4GQ6UXB4 293 aa16.49■□□□□ 0.23
SGCA-202ENST00000344627 MCM10Q7L590 875 aa16.49■□□□□ 0.23
SGCA-202ENST00000344627 SMC1BQ8NDV3 1235 aa16.48■□□□□ 0.23
SGCA-202ENST00000344627 SETDB2Q96T68 719 aa16.48■□□□□ 0.23
SGCA-202ENST00000344627 SIPA1L3O60292 1781 aaPredicted RBP16.48■□□□□ 0.23
SGCA-202ENST00000344627 GLTPD2A6NH11 291 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 KCNQ3O43525 872 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 VEGFAP15692 232 aaPredicted RBP16.47■□□□□ 0.23
SGCA-202ENST00000344627 DCTN1Q14203 1278 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 DPY19L2Q6NUT2 758 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 DNAJC5GQ8N7S2 189 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 ZNF652Q9Y2D9 606 aa16.47■□□□□ 0.23
SGCA-202ENST00000344627 A1BGP04217 495 aa16.46■□□□□ 0.23
SGCA-202ENST00000344627 ST5P78524 1137 aa16.46■□□□□ 0.23
SGCA-202ENST00000344627 DDX10Q13206 875 aaKnown RBP16.46■□□□□ 0.23
SGCA-202ENST00000344627 BICDL1Q6ZP65 573 aa16.46■□□□□ 0.23
SGCA-202ENST00000344627 CNKSR1Q969H4 720 aa16.46■□□□□ 0.23
SGCA-202ENST00000344627 LTBP3Q9NS15 1303 aa16.45■□□□□ 0.22
SGCA-202ENST00000344627 SNRPA1P09661 255 aaKnown RBP16.45■□□□□ 0.22
SGCA-202ENST00000344627 TBC1D9BQ66K14 1250 aa16.45■□□□□ 0.22
SGCA-202ENST00000344627 RRAGCQ9HB90 399 aa16.45■□□□□ 0.22
SGCA-202ENST00000344627 NPHP1O15259 732 aa16.44■□□□□ 0.22
SGCA-202ENST00000344627 STYK1Q6J9G0 422 aa16.44■□□□□ 0.22
SGCA-202ENST00000344627 CNBD1Q8NA66 436 aa16.44■□□□□ 0.22
SGCA-202ENST00000344627 TBC1D2BQ9UPU7 963 aa16.44■□□□□ 0.22
SGCA-202ENST00000344627 TNRC6CQ9HCJ0 1690 aaKnown RBP16.43■□□□□ 0.22
SGCA-202ENST00000344627 PRR5LQ6MZQ0 368 aa16.43■□□□□ 0.22
SGCA-202ENST00000344627 DZIP3Q86Y13 1208 aaKnown RBP16.43■□□□□ 0.22
SGCA-202ENST00000344627 ZNF622Q969S3 477 aaKnown RBP eCLIP16.43■□□□□ 0.22
SGCA-202ENST00000344627 PNNQ9H307 717 aaKnown RBP16.43■□□□□ 0.22
SGCA-202ENST00000344627 MAPK8IP3Q9UPT6 1336 aa16.43■□□□□ 0.22
SGCA-202ENST00000344627 DLEC1Q9Y238 1755 aa16.42■□□□□ 0.22
SGCA-202ENST00000344627 CAMTA2O94983 1202 aa16.42■□□□□ 0.22
SGCA-202ENST00000344627 PNISRQ8TF01 805 aaKnown RBP16.42■□□□□ 0.22
SGCA-202ENST00000344627 KLRG1Q96E93 195 aa16.42■□□□□ 0.22
SGCA-202ENST00000344627 MASTLQ96GX5 879 aa16.42■□□□□ 0.22
SGCA-202ENST00000344627 MIS18AQ9NYP9 233 aa16.42■□□□□ 0.22
SGCA-202ENST00000344627 AFDNP55196 1824 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms