RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 TAF3Q5VWG9 929 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 COG3Q96JB2 828 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 CACNA1FO60840 1977 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 GABPB1Q06547 395 aaPredicted RBP11.58□□□□□ -0.56
HOXA1-201ENST00000343060 GIMAP6Q6P9H5 292 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 RILPL2Q969X0 211 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 ZRANB1Q9UGI0 708 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 LIMCH1Q9UPQ0 1083 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 SNX14Q9Y5W7 946 aa11.58□□□□□ -0.56
HOXA1-201ENST00000343060 TRIM6-TRIM34B2RNG4 842 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 SGSM2O43147 1006 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 GNAI3P08754 354 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 CCDC192P0DO97 292 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 EIF4A2Q14240 407 aaKnown RBP11.57□□□□□ -0.56
HOXA1-201ENST00000343060 RRS1Q15050 365 aaKnown RBP11.57□□□□□ -0.56
HOXA1-201ENST00000343060 RUFY3Q7L099 469 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 G2E3Q7L622 706 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 AEBP1Q8IUX7 1158 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 FAM200AQ8TCP9 573 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 RICTORQ6R327 1708 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 PEAK1Q9H792 1746 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 PNMA6EA0A0J9YXQ4 647 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 SMTNL1A8MU46 457 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 FIBPO43427 364 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 AK2P54819 239 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 LSG1Q9H089 658 aaKnown RBP11.57□□□□□ -0.56
HOXA1-201ENST00000343060 CTNNA3Q9UI47 895 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 MTMR6Q9Y217 621 aa11.57□□□□□ -0.56
HOXA1-201ENST00000343060 CCDC171Q6TFL3 1326 aa11.56□□□□□ -0.56
HOXA1-201ENST00000343060 SPDYE4A6NLX3 237 aa11.56□□□□□ -0.56
HOXA1-201ENST00000343060 F6X3S4 739 aa11.56□□□□□ -0.56
HOXA1-201ENST00000343060 MCM10Q7L590 875 aa11.56□□□□□ -0.56
HOXA1-201ENST00000343060 SMC3Q9UQE7 1217 aa11.56□□□□□ -0.56
HOXA1-201ENST00000343060 ELP1O95163 1332 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 SOS1Q07889 1333 aaPredicted RBP11.55□□□□□ -0.56
HOXA1-201ENST00000343060 WASLO00401 505 aaPredicted RBP11.55□□□□□ -0.56
HOXA1-201ENST00000343060 SULT6B1Q6IMI4 303 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.55□□□□□ -0.56
HOXA1-201ENST00000343060 NRXN3Q9Y4C0 1643 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 OVOS2A0A0J9YW53 1432 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 OVOS2Q6IE36 1432 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 PI4K2BQ8TCG2 481 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 DDX41Q9UJV9 622 aaKnown RBP11.55□□□□□ -0.56
HOXA1-201ENST00000343060 ADGRL3Q9HAR2 1447 aa11.55□□□□□ -0.56
HOXA1-201ENST00000343060 PTGS1P23219 599 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 SLC4A10Q6U841 1118 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 WAPLQ7Z5K2 1190 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 RTF1Q92541 710 aaKnown RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 CGNQ9P2M7 1197 aaKnown RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 MRVI1Q9Y6F6 885 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 PDIA4P13667 645 aaKnown RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 DNM1Q05193 864 aaKnown RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 RBM43Q6ZSC3 357 aaKnown RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 RASEFQ8IZ41 740 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 SPC24Q8NBT2 197 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 KCNB2Q92953 911 aa11.54□□□□□ -0.56
HOXA1-201ENST00000343060 SH2B1Q9NRF2 756 aaPredicted RBP11.54□□□□□ -0.56
HOXA1-201ENST00000343060 RAB11FIP3O75154 756 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 LARGE1O95461 756 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 PLA2G4DQ86XP0 818 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 HYPKQ9NX55 129 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 MORC2Q9Y6X9 1032 aaPredicted RBP11.53□□□□□ -0.56
HOXA1-201ENST00000343060 USP42Q9H9J4 1324 aaKnown RBP11.53□□□□□ -0.56
HOXA1-201ENST00000343060 TECPR2O15040 1411 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 FMN2Q9NZ56 1722 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 TYRO3Q06418 890 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 MAP3K11Q16584 847 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 ZSCAN31Q96LW9 406 aaPredicted RBP11.53□□□□□ -0.56
HOXA1-201ENST00000343060 TM6SF1Q9BZW5 370 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 PAXBP1Q9Y5B6 917 aa11.53□□□□□ -0.56
HOXA1-201ENST00000343060 TOPAZ1Q8N9V7 1692 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 A2ML1A8K2U0 1454 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 MAP3K5Q99683 1374 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 A0A0U1RQG5 324 aaPredicted RBP11.52□□□□□ -0.56
HOXA1-201ENST00000343060 GJB2P29033 226 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 PLCB2Q00722 1185 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 ST3GAL1Q11201 340 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 VPS53Q5VIR6 699 aa11.52□□□□□ -0.56
HOXA1-201ENST00000343060 TDRD7Q8NHU6 1098 aaKnown RBP11.52□□□□□ -0.56
HOXA1-201ENST00000343060 TTC21AQ8NDW8 1320 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 CDC25BP30305 580 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 FLIIQ13045 1269 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 POLA2Q14181 598 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 NUP62CLQ9H1M0 184 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 TTC21BQ7Z4L5 1316 aa11.52□□□□□ -0.57
HOXA1-201ENST00000343060 ZNF75DP51815 510 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 FAM53CQ9NYF3 392 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 TSPYL4Q9UJ04 414 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 LRRFIP2Q9Y608 721 aaKnown RBP11.51□□□□□ -0.57
HOXA1-201ENST00000343060 KDRP35968 1356 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 USP31Q70CQ4 1352 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 SLFN14P0C7P3 912 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 FGD1P98174 961 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 ZSCAN25Q6NSZ9 544 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 CCDC186Q7Z3E2 898 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 TTC6Q86TZ1 520 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 NUDT16Q96DE0 195 aaKnown RBP11.51□□□□□ -0.57
HOXA1-201ENST00000343060 CBX8Q9HC52 389 aa11.51□□□□□ -0.57
HOXA1-201ENST00000343060 CCDC61Q9Y6R9 512 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms