RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C8orf34Q49A92 452 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 DNAAF4Q8WXU2 420 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 GNAI3P08754 354 aa16.77■□□□□ 0.28
HMGB1-202ENST00000339872 AEBP2Q6ZN18 517 aaPredicted RBP16.77■□□□□ 0.28
HMGB1-202ENST00000339872 SRCIN1Q9C0H9 1055 aa16.77■□□□□ 0.28
HMGB1-202ENST00000339872 GNAI2P04899 355 aa16.76■□□□□ 0.27
HMGB1-202ENST00000339872 LNPKQ9C0E8 428 aa16.76■□□□□ 0.27
HMGB1-202ENST00000339872 PDIA6Q15084 440 aa16.76■□□□□ 0.27
HMGB1-202ENST00000339872 CHD1LQ86WJ1 897 aa16.76■□□□□ 0.27
HMGB1-202ENST00000339872 KCPQ6ZWJ8 1503 aa16.76■□□□□ 0.27
HMGB1-202ENST00000339872 ITGB4P16144 1822 aa16.75■□□□□ 0.27
HMGB1-202ENST00000339872 ANKRD45Q5TZF3 282 aa16.75■□□□□ 0.27
HMGB1-202ENST00000339872 USP16Q9Y5T5 823 aa16.75■□□□□ 0.27
HMGB1-202ENST00000339872 MYL6BP14649 208 aa16.75■□□□□ 0.27
HMGB1-202ENST00000339872 MAP3K2Q9Y2U5 619 aa16.75■□□□□ 0.27
HMGB1-202ENST00000339872 AIMP1Q12904 312 aaKnown RBP16.74■□□□□ 0.27
HMGB1-202ENST00000339872 BEND3Q5T5X7 828 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 USP44Q9H0E7 712 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 TMOD3Q9NYL9 352 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 TNS2Q63HR2 1409 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 SPATA31A1Q5TZJ5 1347 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 KSR2Q6VAB6 950 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 DCTPP1Q9H773 170 aa16.74■□□□□ 0.27
HMGB1-202ENST00000339872 SLIT2O94813 1529 aa16.73■□□□□ 0.27
HMGB1-202ENST00000339872 EXOC5O00471 708 aa16.73■□□□□ 0.27
HMGB1-202ENST00000339872 DDX58O95786 925 aaKnown RBP16.73■□□□□ 0.27
HMGB1-202ENST00000339872 UBTFL1P0CB47 393 aaPredicted RBP16.73■□□□□ 0.27
HMGB1-202ENST00000339872 HMMRO75330 724 aa16.73■□□□□ 0.27
HMGB1-202ENST00000339872 JCADQ9P266 1359 aa16.72■□□□□ 0.27
HMGB1-202ENST00000339872 LRP6O75581 1613 aa16.72■□□□□ 0.27
HMGB1-202ENST00000339872 PIP4K2AP48426 406 aaPredicted RBP16.72■□□□□ 0.27
HMGB1-202ENST00000339872 LRRFIP2Q9Y608 721 aaKnown RBP16.72■□□□□ 0.27
HMGB1-202ENST00000339872 PTCD1O75127 700 aaKnown RBP16.71■□□□□ 0.27
HMGB1-202ENST00000339872 NPM2Q86SE8 214 aaKnown RBP16.71■□□□□ 0.27
HMGB1-202ENST00000339872 THRAP3Q9Y2W1 955 aaKnown RBP16.71■□□□□ 0.27
HMGB1-202ENST00000339872 CCDC9Q9Y3X0 531 aaKnown RBP16.71■□□□□ 0.27
HMGB1-202ENST00000339872 XAGE3Q8WTP9 111 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 CDCA7Q9BWT1 371 aaPredicted RBP16.7■□□□□ 0.26
HMGB1-202ENST00000339872 DOT1LQ8TEK3 1739 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 KAT6BQ8WYB5 2073 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 ANP32AP39687 249 aaKnown RBP16.7■□□□□ 0.26
HMGB1-202ENST00000339872 CERKQ8TCT0 537 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 SPATA31A5Q5VU36 1347 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 SPATA31A7Q8IWB4 1347 aa16.7■□□□□ 0.26
HMGB1-202ENST00000339872 COPS6Q7L5N1 327 aa16.69■□□□□ 0.26
HMGB1-202ENST00000339872 RIC3Q7Z5B4 369 aa16.69■□□□□ 0.26
HMGB1-202ENST00000339872 NBPF7P0C2Y1 421 aaPredicted RBP16.69■□□□□ 0.26
HMGB1-202ENST00000339872 LRP10Q7Z4F1 713 aa16.69■□□□□ 0.26
HMGB1-202ENST00000339872 PIGBQ92521 554 aa16.69■□□□□ 0.26
HMGB1-202ENST00000339872 ZBTB47Q9UFB7 747 aaPredicted RBP16.69■□□□□ 0.26
HMGB1-202ENST00000339872 ARFGEF2Q9Y6D5 1785 aa16.69■□□□□ 0.26
HMGB1-202ENST00000339872 ALDH1L1O75891 902 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 CWF19L2Q2TBE0 894 aaKnown RBP16.68■□□□□ 0.26
HMGB1-202ENST00000339872 C8orf37Q96NL8 207 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 PNMA6EA0A0J9YXQ4 647 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 APBB1O00213 710 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 DDB1Q16531 1140 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 BCL11AQ9H165 835 aa16.68■□□□□ 0.26
HMGB1-202ENST00000339872 ATP8B2P98198 1209 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 LINS1Q8NG48 757 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 ASAP1Q9ULH1 1129 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 ERBB4Q15303 1308 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 BCL9O00512 1426 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 AFDNP55196 1824 aaKnown RBP16.67■□□□□ 0.26
HMGB1-202ENST00000339872 NGLY1Q96IV0 654 aa16.67■□□□□ 0.26
HMGB1-202ENST00000339872 C9orf78Q9NZ63 289 aaPredicted RBP16.67■□□□□ 0.26
HMGB1-202ENST00000339872 UNC5CLQ8IV45 518 aa16.66■□□□□ 0.26
HMGB1-202ENST00000339872 SYTL4Q96C24 671 aaPredicted RBP16.66■□□□□ 0.26
HMGB1-202ENST00000339872 NEXNQ0ZGT2 675 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 ANKRD13DQ6ZTN6 518 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 NBPF26B4DH59 902 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 NBPF14Q5TI25 921 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 NBPF10Q6P3W6 841 aaKnown RBP16.65■□□□□ 0.26
HMGB1-202ENST00000339872 NBPF15Q8N660 670 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 EXOC6BQ9Y2D4 811 aa16.65■□□□□ 0.26
HMGB1-202ENST00000339872 BARGINQ6ZT62 677 aa16.64■□□□□ 0.25
HMGB1-202ENST00000339872 BCL9LQ86UU0 1499 aa16.64■□□□□ 0.25
HMGB1-202ENST00000339872 SMARCA5O60264 1052 aaPredicted RBP16.64■□□□□ 0.25
HMGB1-202ENST00000339872 A1BGP04217 495 aa16.64■□□□□ 0.25
HMGB1-202ENST00000339872 IGKV5-2P06315 115 aa16.64■□□□□ 0.25
HMGB1-202ENST00000339872 MYD88Q99836 296 aa16.64■□□□□ 0.25
HMGB1-202ENST00000339872 METTL22Q9BUU2 404 aaPredicted RBP16.64■□□□□ 0.25
HMGB1-202ENST00000339872 SPATA31A6Q5VVP1 1343 aa16.63■□□□□ 0.25
HMGB1-202ENST00000339872 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
HMGB1-202ENST00000339872 NUP188Q5SRE5 1749 aa16.63■□□□□ 0.25
HMGB1-202ENST00000339872 GRM8O00222 908 aa16.63■□□□□ 0.25
HMGB1-202ENST00000339872 PPP1R42Q7Z4L9 355 aa16.63■□□□□ 0.25
HMGB1-202ENST00000339872 NEURL1BA8MQ27 555 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 PRIM1P49642 420 aaKnown RBP16.62■□□□□ 0.25
HMGB1-202ENST00000339872 C16orf71Q8IYS4 520 aaPredicted RBP16.62■□□□□ 0.25
HMGB1-202ENST00000339872 SSH3Q8TE77 659 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 A0A0G2JS52 829 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 SRGAP3O43295 1099 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 SEC24BO95487 1268 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 BMP2KLQ5H9B9 411 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 VSIG10Q8N0Z9 540 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 PLBD2Q8NHP8 589 aa16.62■□□□□ 0.25
HMGB1-202ENST00000339872 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.61■□□□□ 0.25
HMGB1-202ENST00000339872 VPS72Q15906 364 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms