RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 ARHGAP27Q6ZUM4 889 aa14.3□□□□□ -0.12
CAPN3-202ENST00000337571 VSIG10Q8N0Z9 540 aa14.3□□□□□ -0.12
CAPN3-202ENST00000337571 ZNF526Q8TF50 670 aaPredicted RBP14.3□□□□□ -0.12
CAPN3-202ENST00000337571 SRP68Q9UHB9 627 aaKnown RBP14.3□□□□□ -0.12
CAPN3-202ENST00000337571 NUDCQ9Y266 331 aa14.3□□□□□ -0.12
CAPN3-202ENST00000337571 ATP10DQ9P241 1426 aa14.3□□□□□ -0.12
CAPN3-202ENST00000337571 TJP1Q07157 1748 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 N4BP2Q86UW6 1770 aaPredicted RBP14.29□□□□□ -0.12
CAPN3-202ENST00000337571 KIF13BQ9NQT8 1826 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 FCHSD2O94868 740 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 STARD3NLO95772 234 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 CYP19A1P11511 503 aaPredicted RBP14.29□□□□□ -0.12
CAPN3-202ENST00000337571 DPEP1P16444 411 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 FKBP8Q14318 412 aa14.29□□□□□ -0.12
CAPN3-202ENST00000337571 USP42Q9H9J4 1324 aaKnown RBP14.29□□□□□ -0.12
CAPN3-202ENST00000337571 PIM2Q9P1W9 311 aa14.28□□□□□ -0.12
CAPN3-202ENST00000337571 PXDNLA1KZ92 1463 aa14.27□□□□□ -0.12
CAPN3-202ENST00000337571 USPL1Q5W0Q7 1092 aa14.27□□□□□ -0.13
CAPN3-202ENST00000337571 TEX13AQ9BXU3 409 aaPredicted RBP14.27□□□□□ -0.13
CAPN3-202ENST00000337571 C10orf71Q711Q0 1435 aa14.26□□□□□ -0.13
CAPN3-202ENST00000337571 SOS1Q07889 1333 aaPredicted RBP14.26□□□□□ -0.13
CAPN3-202ENST00000337571 CANXP27824 592 aaKnown RBP14.26□□□□□ -0.13
CAPN3-202ENST00000337571 TM4SF1P30408 202 aa14.26□□□□□ -0.13
CAPN3-202ENST00000337571 DALRD3Q5D0E6 543 aaKnown RBP14.26□□□□□ -0.13
CAPN3-202ENST00000337571 NPM2Q86SE8 214 aaKnown RBP14.26□□□□□ -0.13
CAPN3-202ENST00000337571 NARFQ9UHQ1 456 aa14.26□□□□□ -0.13
CAPN3-202ENST00000337571 MRC1P22897 1456 aa14.25□□□□□ -0.13
CAPN3-202ENST00000337571 IL17REQ8NFR9 667 aa14.25□□□□□ -0.13
CAPN3-202ENST00000337571 A0A087WZG4 1122 aa14.24□□□□□ -0.13
CAPN3-202ENST00000337571 U2AF1L5P0DN76 240 aaPredicted RBP14.24□□□□□ -0.13
CAPN3-202ENST00000337571 PRKAR2BP31323 418 aa14.24□□□□□ -0.13
CAPN3-202ENST00000337571 U2AF1Q01081 240 aaKnown RBP eCLIP14.24□□□□□ -0.13
CAPN3-202ENST00000337571 DDR1Q08345 913 aa14.24□□□□□ -0.13
CAPN3-202ENST00000337571 ZNF790Q6PG37 636 aa14.24□□□□□ -0.13
CAPN3-202ENST00000337571 RTF1Q92541 710 aaKnown RBP14.24□□□□□ -0.13
CAPN3-202ENST00000337571 ZBTB1Q9Y2K1 713 aa14.24□□□□□ -0.13
CAPN3-202ENST00000337571 COL3A1P02461 1466 aaPredicted RBP14.24□□□□□ -0.13
CAPN3-202ENST00000337571 ADAMTS7Q9UKP4 1686 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 COL15A1P39059 1388 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 BTBD11A6QL63 1104 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 POLRMTO00411 1230 aaKnown RBP14.23□□□□□ -0.13
CAPN3-202ENST00000337571 KCNA3P22001 575 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 PPP2R1AP30153 589 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 FMNL2Q96PY5 1086 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 KCPQ6ZWJ8 1503 aa14.23□□□□□ -0.13
CAPN3-202ENST00000337571 ADCY9O60503 1353 aa14.22□□□□□ -0.13
CAPN3-202ENST00000337571 KIAA1551Q9HCM1 1747 aa14.22□□□□□ -0.13
CAPN3-202ENST00000337571 NEFMP07197 916 aa14.22□□□□□ -0.13
CAPN3-202ENST00000337571 ZNF496Q96IT1 587 aaPredicted RBP14.22□□□□□ -0.13
CAPN3-202ENST00000337571 PHACTR3Q96KR7 559 aa14.22□□□□□ -0.13
CAPN3-202ENST00000337571 RSPH6AQ9H0K4 717 aa14.22□□□□□ -0.13
CAPN3-202ENST00000337571 ZNF330Q9Y3S2 320 aaPredicted RBP14.22□□□□□ -0.13
CAPN3-202ENST00000337571 SERPINB2P05120 415 aa14.21□□□□□ -0.13
CAPN3-202ENST00000337571 CHRNA5P30532 468 aa14.21□□□□□ -0.13
CAPN3-202ENST00000337571 NFIXQ14938 502 aa14.21□□□□□ -0.13
CAPN3-202ENST00000337571 UBR2Q8IWV8 1755 aa14.21□□□□□ -0.13
CAPN3-202ENST00000337571 HEG1Q9ULI3 1381 aa14.21□□□□□ -0.14
CAPN3-202ENST00000337571 EIF5P55010 431 aaKnown RBP14.2□□□□□ -0.14
CAPN3-202ENST00000337571 BICDL1Q6ZP65 573 aa14.2□□□□□ -0.14
CAPN3-202ENST00000337571 BRCA1P38398 1863 aaKnown RBP14.2□□□□□ -0.14
CAPN3-202ENST00000337571 ARFGEF1Q9Y6D6 1849 aa14.2□□□□□ -0.14
CAPN3-202ENST00000337571 CEP350Q5VT06 3117 aa14.19□□□□□ -0.14
CAPN3-202ENST00000337571 IL6STP40189 918 aaPredicted RBP14.19□□□□□ -0.14
CAPN3-202ENST00000337571 H0YIN7 160 aa14.18□□□□□ -0.14
CAPN3-202ENST00000337571 NPHP1O15259 732 aa14.18□□□□□ -0.14
CAPN3-202ENST00000337571 C9orf131Q5VYM1 1079 aa14.18□□□□□ -0.14
CAPN3-202ENST00000337571 BCL2L12Q9HB09 334 aa14.18□□□□□ -0.14
CAPN3-202ENST00000337571 TBC1D2BQ9UPU7 963 aa14.18□□□□□ -0.14
CAPN3-202ENST00000337571 SIPA1L3O60292 1781 aaPredicted RBP14.18□□□□□ -0.14
CAPN3-202ENST00000337571 AFDNP55196 1824 aaKnown RBP14.18□□□□□ -0.14
CAPN3-202ENST00000337571 C2CD5Q86YS7 1000 aa14.17□□□□□ -0.14
CAPN3-202ENST00000337571 CEMIPQ8WUJ3 1361 aa14.17□□□□□ -0.14
CAPN3-202ENST00000337571 HTATSF1O43719 755 aaKnown RBP14.16□□□□□ -0.14
CAPN3-202ENST00000337571 A1BGP04217 495 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 HSPA6P17066 643 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 MCM10Q7L590 875 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 C16orf71Q8IYS4 520 aaPredicted RBP14.16□□□□□ -0.14
CAPN3-202ENST00000337571 TTLL6Q8N841 843 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 SETDB2Q96T68 719 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 PNNQ9H307 717 aaKnown RBP14.16□□□□□ -0.14
CAPN3-202ENST00000337571 RNF181Q9P0P0 153 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 PDZRN3Q9UPQ7 1066 aa14.16□□□□□ -0.14
CAPN3-202ENST00000337571 KDM2BQ8NHM5 1336 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 KIF3CO14782 793 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 KCNQ3O43525 872 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 TOMM70O94826 608 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 SNRPA1P09661 255 aaKnown RBP14.15□□□□□ -0.14
CAPN3-202ENST00000337571 PDE6BP35913 854 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 MKRN4PQ13434 485 aaPredicted RBP14.15□□□□□ -0.14
CAPN3-202ENST00000337571 TBC1D9BQ66K14 1250 aa14.15□□□□□ -0.14
CAPN3-202ENST00000337571 TAF7Q15545 349 aaPredicted RBP14.14□□□□□ -0.15
CAPN3-202ENST00000337571 USP16Q9Y5T5 823 aa14.14□□□□□ -0.15
CAPN3-202ENST00000337571 NRXN2Q9P2S2 1712 aa14.13□□□□□ -0.15
CAPN3-202ENST00000337571 DCTN1Q14203 1278 aa14.13□□□□□ -0.15
CAPN3-202ENST00000337571 DZIP3Q86Y13 1208 aaKnown RBP14.13□□□□□ -0.15
CAPN3-202ENST00000337571 ZNF622Q969S3 477 aaKnown RBP eCLIP14.13□□□□□ -0.15
CAPN3-202ENST00000337571 BRIP1Q9BX63 1249 aa14.13□□□□□ -0.15
CAPN3-202ENST00000337571 CARMIL3Q8ND23 1372 aa14.12□□□□□ -0.15
CAPN3-202ENST00000337571 NMRK2Q9NPI5 230 aa14.12□□□□□ -0.15
CAPN3-202ENST00000337571 ZNF652Q9Y2D9 606 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms