RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 STRN4Q9NRL3 753 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 GLRX3O76003 335 aaKnown RBP18.78■□□□□ 0.6
NPHP3-201ENST00000337331 SLU7O95391 586 aaKnown RBP18.78■□□□□ 0.6
NPHP3-201ENST00000337331 TTC39AQ5SRH9 613 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 PDLIM2Q96JY6 352 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 PPP6R1Q9UPN7 881 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 TTC31Q49AM3 519 aaPredicted RBP18.78■□□□□ 0.6
NPHP3-201ENST00000337331 STK11IPQ8N1F8 1099 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 NEK11Q8NG66 645 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 CNPY2Q9Y2B0 182 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 TERF2Q15554 542 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 JMYQ8N9B5 988 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 CCDC83Q8IWF9 413 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 BANK1Q8NDB2 785 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 DDX11Q96FC9 970 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 FBLN1P23142 703 aa18.77■□□□□ 0.6
NPHP3-201ENST00000337331 RBM33Q96EV2 1170 aaKnown RBP18.77■□□□□ 0.6
NPHP3-201ENST00000337331 NAP1L1P55209 391 aaKnown RBP18.77■□□□□ 0.59
NPHP3-201ENST00000337331 CEP126Q9P2H0 1117 aa18.77■□□□□ 0.59
NPHP3-201ENST00000337331 BRPF1P55201 1214 aaPredicted RBP18.76■□□□□ 0.59
NPHP3-201ENST00000337331 FBXO31Q5XUX0 539 aaPredicted RBP18.76■□□□□ 0.59
NPHP3-201ENST00000337331 GIMAP7Q8NHV1 300 aa18.76■□□□□ 0.59
NPHP3-201ENST00000337331 ACBD3Q9H3P7 528 aa18.76■□□□□ 0.59
NPHP3-201ENST00000337331 PYCARDQ9ULZ3 195 aa18.76■□□□□ 0.59
NPHP3-201ENST00000337331 C14orf93Q9H972 538 aaKnown RBP18.76■□□□□ 0.59
NPHP3-201ENST00000337331 KIF6Q6ZMV9 814 aa18.76■□□□□ 0.59
NPHP3-201ENST00000337331 USP8P40818 1118 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 ZC3H6P61129 1189 aaKnown RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 GPATCH8Q9UKJ3 1502 aaKnown RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 KIF2AO00139 706 aaPredicted RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 SERPINC1P01008 464 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 SKILP12757 684 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 UBE2HP62256 183 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 TAF7Q15545 349 aaPredicted RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 ARHGAP29Q52LW3 1261 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 PRPF40BQ6NWY9 871 aaKnown RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 DNAAF4Q8WXU2 420 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 CCDC57Q2TAC2 916 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 THOC2Q8NI27 1593 aaKnown RBP18.75■□□□□ 0.59
NPHP3-201ENST00000337331 NOS1P29475 1434 aa18.75■□□□□ 0.59
NPHP3-201ENST00000337331 FAM83GA6ND36 823 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 GADD45BO75293 160 aaPredicted RBP18.74■□□□□ 0.59
NPHP3-201ENST00000337331 HNRNPH2P55795 449 aaKnown RBP18.74■□□□□ 0.59
NPHP3-201ENST00000337331 CFAP45Q9UL16 551 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 KRT32Q14532 448 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 ZNF526Q8TF50 670 aaPredicted RBP18.74■□□□□ 0.59
NPHP3-201ENST00000337331 IBTKQ9P2D0 1353 aaPredicted RBP18.74■□□□□ 0.59
NPHP3-201ENST00000337331 ZNF165P49910 485 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 ZNF710Q8N1W2 664 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.74■□□□□ 0.591e-8■■■■■ 50
NPHP3-201ENST00000337331 BOLA2Q9H3K6 86 aa18.74■□□□□ 0.59
NPHP3-201ENST00000337331 SNW1Q13573 536 aaKnown RBP18.73■□□□□ 0.59
NPHP3-201ENST00000337331 TOM1L2Q6ZVM7 507 aa18.73■□□□□ 0.59
NPHP3-201ENST00000337331 SPG7Q9UQ90 795 aa18.73■□□□□ 0.59
NPHP3-201ENST00000337331 TDO2P48775 406 aa18.73■□□□□ 0.59
NPHP3-201ENST00000337331 CCDC85AQ96PX6 553 aaPredicted RBP18.73■□□□□ 0.59
NPHP3-201ENST00000337331 SECISBP2LQ93073 1101 aaKnown RBP18.73■□□□□ 0.59
NPHP3-201ENST00000337331 WASLO00401 505 aaPredicted RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 BRD2P25440 801 aaKnown RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 NAA30Q147X3 362 aaPredicted RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 AXDND1Q5T1B0 1012 aaPredicted RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 USHBP1Q8N6Y0 703 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 SPATA31E1Q6ZUB1 1445 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 FILIP1LQ4L180 1135 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 KIF14Q15058 1648 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 MYCBPQ99417 103 aaPredicted RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 MBIPQ9NS73 344 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 ZNF215Q9UL58 517 aaPredicted RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 CAPN2P17655 700 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 TRIM22Q8IYM9 498 aa18.72■□□□□ 0.59
NPHP3-201ENST00000337331 NSFL1CQ9UNZ2 370 aaKnown RBP18.72■□□□□ 0.59
NPHP3-201ENST00000337331 RAB11FIP3O75154 756 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 EIF3JO75822 258 aaKnown RBP18.71■□□□□ 0.59
NPHP3-201ENST00000337331 LUZP1Q86V48 1076 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 FAM200AQ8TCP9 573 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 NUP160Q12769 1436 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 UGGT2Q9NYU1 1516 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 A0A1B0GUL7 405 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 FLIIQ13045 1269 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 SAMD1Q6SPF0 538 aaPredicted RBP18.71■□□□□ 0.59
NPHP3-201ENST00000337331 CEP57L1Q8IYX8 460 aa18.71■□□□□ 0.59
NPHP3-201ENST00000337331 ADGRL1O94910 1474 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 LRMPQ12912 555 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 TESK2Q96S53 571 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 CENPHQ9H3R5 247 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 CT47A1Q5JQC4 288 aaPredicted RBP18.7■□□□□ 0.58
NPHP3-201ENST00000337331 TSHZ3Q63HK5 1081 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 RUFY1Q96T51 708 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 ZSCAN26Q16670 478 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 ERO1AQ96HE7 468 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 TCEAL9Q9UHQ7 104 aa18.7■□□□□ 0.58
NPHP3-201ENST00000337331 CCDC171Q6TFL3 1326 aa18.69■□□□□ 0.58
NPHP3-201ENST00000337331 CD109Q6YHK3 1445 aa18.69■□□□□ 0.58
NPHP3-201ENST00000337331 PRDM11Q9NQV5 511 aa18.69■□□□□ 0.58
NPHP3-201ENST00000337331 SFPQP23246 707 aaKnown RBP eCLIP18.69■□□□□ 0.58
NPHP3-201ENST00000337331 CCDC8Q9H0W5 538 aaPredicted RBP18.69■□□□□ 0.58
NPHP3-201ENST00000337331 CTNNA3Q9UI47 895 aa18.69■□□□□ 0.58
NPHP3-201ENST00000337331 NACAP1Q9BZK3 213 aa18.68■□□□□ 0.58
NPHP3-201ENST00000337331 RALGAPBQ86X10 1494 aa18.68■□□□□ 0.58
NPHP3-201ENST00000337331 KIAA0556O60303 1618 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms