RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 DOCK2Q92608 1830 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 PIP4K2BP78356 416 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 SUZ12Q15022 739 aaKnown RBP2.6□□□□□ -1.99
LINC00643-201ENST00000334389 SLC51AQ86UW1 340 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 MPNDQ8N594 471 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 SYMPKQ92797 1274 aaKnown RBP2.6□□□□□ -1.99
LINC00643-201ENST00000334389 ARMC5Q96C12 935 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 COL4A3Q01955 1670 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 WASHC2AQ641Q2 1341 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 AK9Q5TCS8 1911 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 POLD1P28340 1107 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 PKN1Q16512 942 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 UBE2Q1Q7Z7E8 422 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 ZC3H15Q8WU90 426 aaKnown RBP2.6□□□□□ -1.99
LINC00643-201ENST00000334389 SMARCC1Q92922 1105 aaPredicted RBP2.6□□□□□ -1.99
LINC00643-201ENST00000334389 FOXD4L1Q9NU39 408 aa2.6□□□□□ -1.99
LINC00643-201ENST00000334389 PPEF1O14829 653 aaPredicted RBP2.59□□□□□ -1.99
LINC00643-201ENST00000334389 LDHDQ86WU2 507 aa2.59□□□□□ -1.99
LINC00643-201ENST00000334389 WWC3Q9ULE0 1092 aa2.59□□□□□ -1.99
LINC00643-201ENST00000334389 CCDC61Q9Y6R9 512 aa2.59□□□□□ -1.99
LINC00643-201ENST00000334389 ECE1P42892 770 aa2.59□□□□□ -1.99
LINC00643-201ENST00000334389 EIF5P55010 431 aaKnown RBP2.59□□□□□ -1.99
LINC00643-201ENST00000334389 STXBP5LQ9Y2K9 1186 aa2.59□□□□□ -1.99
LINC00643-201ENST00000334389 ZSWIM8A7E2V4 1837 aa2.59□□□□□ -2
LINC00643-201ENST00000334389 ZNF804BA4D1E1 1349 aa2.59□□□□□ -2
LINC00643-201ENST00000334389 FMR1Q06787 632 aaKnown RBP eCLIP2.59□□□□□ -2
LINC00643-201ENST00000334389 CC2D2BQ6DHV5 1058 aa2.59□□□□□ -2
LINC00643-201ENST00000334389 PRRX2Q99811 253 aa2.59□□□□□ -2
LINC00643-201ENST00000334389 PLXNB2O15031 1838 aa2.59□□□□□ -2
LINC00643-201ENST00000334389 RIMBP2O15034 1052 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 CHRM1P11229 460 aaPredicted RBP2.58□□□□□ -2
LINC00643-201ENST00000334389 KRTAP21-3Q3LHN1 58 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 IRF2BPLQ9H1B7 796 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 DAXXQ9UER7 740 aaPredicted RBP2.58□□□□□ -2
LINC00643-201ENST00000334389 PHF8Q9UPP1 1060 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 NBPF15Q8N660 670 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 ABHD8Q96I13 439 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 TLL2Q9Y6L7 1015 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 TANC1Q9C0D5 1861 aa2.58□□□□□ -2
LINC00643-201ENST00000334389 HAP1P54257 671 aaPredicted RBP2.57□□□□□ -2
LINC00643-201ENST00000334389 UNC79Q9P2D8 2635 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 STYK1Q6J9G0 422 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 Q6ZNB5 142 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 ANKLE1Q8NAG6 615 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 PLXNA3P51805 1871 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 ATP6V1AP38606 617 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 INSM1Q01101 510 aaPredicted RBP2.57□□□□□ -2
LINC00643-201ENST00000334389 EZH2Q15910 746 aaKnown RBP2.57□□□□□ -2
LINC00643-201ENST00000334389 TRAF7Q6Q0C0 670 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 KRT28Q7Z3Y7 464 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 SEZ6LQ9BYH1 1024 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 PRDM6Q9NQX0 595 aa2.57□□□□□ -2
LINC00643-201ENST00000334389 MYH14Q7Z406 1995 aaKnown RBP2.57□□□□□ -2
LINC00643-201ENST00000334389 TSC2P49815 1807 aa2.56□□□□□ -2
LINC00643-201ENST00000334389 NRG2O14511 850 aaPredicted RBP2.56□□□□□ -2
LINC00643-201ENST00000334389 LRIT3Q3SXY7 679 aa2.56□□□□□ -2
LINC00643-201ENST00000334389 MYH3P11055 1940 aa2.56□□□□□ -2
LINC00643-201ENST00000334389 NUP98P52948 1817 aa2.56□□□□□ -2
LINC00643-201ENST00000334389 NUTM2BA6NNL0 878 aaPredicted RBP2.56□□□□□ -2
LINC00643-201ENST00000334389 NUTM2EB1AL46 878 aaPredicted RBP2.56□□□□□ -2
LINC00643-201ENST00000334389 NUTM2DQ5VT03 806 aaPredicted RBP2.56□□□□□ -2
LINC00643-201ENST00000334389 NUTM2AQ8IVF1 878 aaPredicted RBP2.56□□□□□ -2
LINC00643-201ENST00000334389 RLFQ13129 1914 aa2.56□□□□□ -2
LINC00643-201ENST00000334389 IQCA1LA6NCM1 817 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 GLTPD2A6NH11 291 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 TMC4Q7Z404 712 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 ANKRD23Q86SG2 305 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 VSIG10Q8N0Z9 540 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 C8orf37Q96NL8 207 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 CACNA1SQ13698 1873 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 PROB1E7EW31 1015 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 TK2O00142 265 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 WIPF1O43516 503 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 HSPA1AP0DMV8 641 aaKnown RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 HSPA1BP0DMV9 641 aaKnown RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 TXNRD1Q16881 649 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 PNMA8AQ86V59 439 aaPredicted RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 ARHGEF25Q86VW2 580 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 TRIM52Q96A61 297 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 SLC4A1APQ9BWU0 796 aaKnown RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 RTFDC1Q9BY42 306 aaPredicted RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 FHDC1Q9C0D6 1143 aaPredicted RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 ZNF76P36508 570 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 IRF5Q13568 498 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 TREML4Q6UXN2 200 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 USP50Q70EL3 339 aaPredicted RBP2.55□□□□□ -2
LINC00643-201ENST00000334389 ERMP1Q7Z2K6 904 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 PSMD1Q99460 953 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 TRIM35Q9UPQ4 493 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 ZNF541Q9H0D2 1346 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 PRR36Q9H6K5 1346 aa2.55□□□□□ -2
LINC00643-201ENST00000334389 RAB3GAP2Q9H2M9 1393 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 DOCK1Q14185 1865 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 HOXB3P14651 431 aaPredicted RBP2.54□□□□□ -2
LINC00643-201ENST00000334389 MAP3K11Q16584 847 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 GRIN2DO15399 1336 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 HABP4Q5JVS0 413 aaKnown RBP2.54□□□□□ -2
LINC00643-201ENST00000334389 LRRC4BQ9NT99 713 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 DENND4AQ7Z401 1863 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 ACEP12821 1306 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms