RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 CLTCL1P53675 1640 aa24.43■■□□□ 1.5
CMTM4-201ENST00000330687 BECN2A8MW95 431 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 ZNF75DP51815 510 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 RTL1A6NKG5 1358 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 JAKMIP1Q96N16 626 aaKnown RBP24.42■■□□□ 1.5
CMTM4-201ENST00000330687 POLKQ9UBT6 870 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 ZRANB1Q9UGI0 708 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 RUFY3Q7L099 469 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 FUCA2Q9BTY2 467 aa24.42■■□□□ 1.5
CMTM4-201ENST00000330687 TTC6Q86TZ1 520 aa24.41■■□□□ 1.5
CMTM4-201ENST00000330687 NCBP3Q53F19 620 aaKnown RBP24.41■■□□□ 1.5
CMTM4-201ENST00000330687 PRAM1Q96QH2 718 aa24.41■■□□□ 1.5
CMTM4-201ENST00000330687 PTCH1Q13635 1447 aa24.41■■□□□ 1.5
CMTM4-201ENST00000330687 KRT85P78386 507 aa24.41■■□□□ 1.5
CMTM4-201ENST00000330687 SHROOM2Q13796 1616 aa24.4■■□□□ 1.5
CMTM4-201ENST00000330687 RBM6P78332 1123 aaKnown RBP24.4■■□□□ 1.5
CMTM4-201ENST00000330687 PNMA6EA0A0J9YXQ4 647 aa24.4■■□□□ 1.5
CMTM4-201ENST00000330687 BRPF1P55201 1214 aaPredicted RBP24.39■■□□□ 1.5
CMTM4-201ENST00000330687 CHMP4CQ96CF2 233 aa24.39■■□□□ 1.5
CMTM4-201ENST00000330687 ANAPC15P60006 121 aa24.39■■□□□ 1.49
CMTM4-201ENST00000330687 C10orf67Q8IYJ2 551 aa24.39■■□□□ 1.49
CMTM4-201ENST00000330687 ERCC4Q92889 916 aaPredicted RBP24.39■■□□□ 1.49
CMTM4-201ENST00000330687 CDC42BPBQ9Y5S2 1711 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 HOMER1Q86YM7 354 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 SPATA32Q96LK8 384 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 SNX14Q9Y5W7 946 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 GNAI2P04899 355 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 RGS12O14924 1447 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 MTMR6Q9Y217 621 aa24.38■■□□□ 1.49
CMTM4-201ENST00000330687 PPFIA3O75145 1194 aa24.37■■□□□ 1.49
CMTM4-201ENST00000330687 PRPF40BQ6NWY9 871 aaKnown RBP24.37■■□□□ 1.49
CMTM4-201ENST00000330687 FAM177A1Q8N128 213 aaPredicted RBP24.37■■□□□ 1.49
CMTM4-201ENST00000330687 FMNL2Q96PY5 1086 aa24.37■■□□□ 1.49
CMTM4-201ENST00000330687 HTATSF1O43719 755 aaKnown RBP24.36■■□□□ 1.49
CMTM4-201ENST00000330687 LMOD3Q0VAK6 560 aa24.36■■□□□ 1.49
CMTM4-201ENST00000330687 OS9Q13438 667 aaPredicted RBP24.36■■□□□ 1.49
CMTM4-201ENST00000330687 NSD2O96028 1365 aa24.36■■□□□ 1.49
CMTM4-201ENST00000330687 CDC37L1Q7L3B6 337 aa24.36■■□□□ 1.49
CMTM4-201ENST00000330687 PDRG1Q9NUG6 133 aa24.36■■□□□ 1.49
CMTM4-201ENST00000330687 ADGRL1O94910 1474 aa24.36■■□□□ 1.49
CMTM4-201ENST00000330687 TMEM87AQ8NBN3 555 aa24.35■■□□□ 1.49
CMTM4-201ENST00000330687 STAG3Q9UJ98 1225 aa24.35■■□□□ 1.49
CMTM4-201ENST00000330687 CFAP65Q6ZU64 1925 aaKnown RBP24.35■■□□□ 1.49
CMTM4-201ENST00000330687 RAD50Q92878 1312 aa24.35■■□□□ 1.49
CMTM4-201ENST00000330687 SURF6O75683 361 aaKnown RBP24.35■■□□□ 1.49
CMTM4-201ENST00000330687 IRX3P78415 501 aaPredicted RBP24.35■■□□□ 1.49
CMTM4-201ENST00000330687 SLU7O95391 586 aaKnown RBP24.35■■□□□ 1.49
CMTM4-201ENST00000330687 CCDC69A6NI79 296 aa24.34■■□□□ 1.49
CMTM4-201ENST00000330687 GNL2Q13823 731 aaKnown RBP24.34■■□□□ 1.49
CMTM4-201ENST00000330687 PIK3R4Q99570 1358 aa24.34■■□□□ 1.49
CMTM4-201ENST00000330687 SBNO2Q9Y2G9 1366 aa24.34■■□□□ 1.49
CMTM4-201ENST00000330687 TRPM2O94759 1503 aa24.34■■□□□ 1.49
CMTM4-201ENST00000330687 ARHGAP29Q52LW3 1261 aa24.34■■□□□ 1.49
CMTM4-201ENST00000330687 ZCCHC17Q9NP64 241 aaKnown RBP24.34■■□□□ 1.49
CMTM4-201ENST00000330687 SYT10Q6XYQ8 523 aa24.33■■□□□ 1.49
CMTM4-201ENST00000330687 DDX11Q96FC9 970 aa24.33■■□□□ 1.49
CMTM4-201ENST00000330687 RSPH14Q9UHP6 348 aa24.33■■□□□ 1.49
CMTM4-201ENST00000330687 ATP10DQ9P241 1426 aa24.33■■□□□ 1.49
CMTM4-201ENST00000330687 LRRN4CLQ8ND94 238 aa24.33■■□□□ 1.49
CMTM4-201ENST00000330687 HSPA4P34932 840 aa24.33■■□□□ 1.48
CMTM4-201ENST00000330687 SULT6B1Q6IMI4 303 aa24.33■■□□□ 1.48
CMTM4-201ENST00000330687 LRRFIP2Q9Y608 721 aaKnown RBP24.33■■□□□ 1.48
CMTM4-201ENST00000330687 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.48
CMTM4-201ENST00000330687 ABCA6Q8N139 1617 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 NR1I2O75469 434 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 BMS1Q14692 1282 aaKnown RBP24.32■■□□□ 1.48
CMTM4-201ENST00000330687 TAF7LQ5H9L4 462 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 RAD51AP2Q09MP3 1159 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 CCDC34Q96HJ3 373 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 ADCK5Q3MIX3 580 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 CCAR2Q8N163 923 aaKnown RBP24.32■■□□□ 1.48
CMTM4-201ENST00000330687 SPHKAPQ2M3C7 1700 aa24.32■■□□□ 1.48
CMTM4-201ENST00000330687 KRBA2Q6ZNG9 492 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 NME9Q86XW9 330 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 LRRC8AQ8IWT6 810 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 SKIDA1Q1XH10 827 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 TEX35Q5T0J7 233 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 CDK19Q9BWU1 502 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 ERO1AQ96HE7 468 aa24.31■■□□□ 1.48
CMTM4-201ENST00000330687 GYS2P54840 703 aa24.3■■□□□ 1.48
CMTM4-201ENST00000330687 ZNF446Q9NWS9 450 aa24.3■■□□□ 1.48
CMTM4-201ENST00000330687 SEC31AO94979 1220 aaKnown RBP24.29■■□□□ 1.48
CMTM4-201ENST00000330687 ADGRB2O60241 1585 aa24.29■■□□□ 1.48
CMTM4-201ENST00000330687 ZNF853P0CG23 659 aa24.29■■□□□ 1.48
CMTM4-201ENST00000330687 EPC1Q9H2F5 836 aa24.29■■□□□ 1.48
CMTM4-201ENST00000330687 SNW1Q13573 536 aaKnown RBP24.28■■□□□ 1.48
CMTM4-201ENST00000330687 STK31Q9BXU1 1019 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 TOMM22Q9NS69 142 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 TRIM66O15016 1216 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 SYCP1Q15431 976 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 MNS1Q8NEH6 495 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 FEZ2Q9UHY8 353 aaPredicted RBP24.28■■□□□ 1.48
CMTM4-201ENST00000330687 CYP46A1Q9Y6A2 500 aa24.28■■□□□ 1.48
CMTM4-201ENST00000330687 CLCN6P51797 869 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 TSPYL4Q9UJ04 414 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 PREX2Q70Z35 1606 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 SMC2O95347 1197 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 ME3Q16798 604 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 TMCO3Q6UWJ1 677 aa24.27■■□□□ 1.48
CMTM4-201ENST00000330687 OSBPL3Q9H4L5 887 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms