RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 C6orf229H3BNL8 230 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 U3KPZ7 1027 aaPredicted RBP11.94□□□□□ -0.5
CHD3-201ENST00000330494 PPFIBP1Q86W92 1011 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 CHPF2Q9P2E5 772 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 SLC5A1P13866 664 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 KRT32Q14532 448 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 NUP62CLQ9H1M0 184 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 GRPEL1Q9HAV7 217 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 ATP10BO94823 1461 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 ASXL2Q76L83 1435 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 TNRQ92752 1358 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 STIM1Q13586 685 aa11.94□□□□□ -0.5
CHD3-201ENST00000330494 ARGLU1Q9NWB6 273 aaPredicted RBP11.94□□□□□ -0.5
CHD3-201ENST00000330494 DHX29Q7Z478 1369 aaKnown RBP11.93□□□□□ -0.5
CHD3-201ENST00000330494 PAF1Q8N7H5 531 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 PTPRKQ15262 1439 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 NCKAP5LQ9HCH0 1330 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 FILIP1Q7Z7B0 1213 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 CEP57L1Q8IYX8 460 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 PPIP5K1Q6PFW1 1433 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 ZNF213O14771 459 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 IFNL2Q8IZJ0 200 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 ZSCAN31Q96LW9 406 aaPredicted RBP11.93□□□□□ -0.5
CHD3-201ENST00000330494 CFAP45Q9UL16 551 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 CCDC173Q0VFZ6 552 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 CCDC96Q2M329 555 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 KLHL10Q6JEL2 608 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 PPP1R42Q7Z4L9 355 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 GDPD2Q9HCC8 539 aa11.93□□□□□ -0.5
CHD3-201ENST00000330494 IQSEC3Q9UPP2 1182 aaPredicted RBP11.93□□□□□ -0.5
CHD3-201ENST00000330494 MCM4P33991 863 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 TMOD2Q9NZR1 351 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 CWC15Q9P013 229 aaKnown RBP11.92□□□□□ -0.5
CHD3-201ENST00000330494 LDHAL6AQ6ZMR3 332 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 VAT1LQ9HCJ6 419 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 KIF21AQ7Z4S6 1674 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 MAP3K12Q12852 859 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 ZNHIT6Q9NWK9 470 aaKnown RBP11.92□□□□□ -0.5
CHD3-201ENST00000330494 CWC25Q9NXE8 425 aaPredicted RBP11.92□□□□□ -0.5
CHD3-201ENST00000330494 SEC63Q9UGP8 760 aaKnown RBP11.92□□□□□ -0.5
CHD3-201ENST00000330494 ABCC11Q96J66 1382 aa11.92□□□□□ -0.5
CHD3-201ENST00000330494 MYCNP04198 464 aaPredicted RBP11.92□□□□□ -0.5
CHD3-201ENST00000330494 ZNF622Q969S3 477 aaKnown RBP eCLIP11.92□□□□□ -0.51e-6■■■□□ 18.8
CHD3-201ENST00000330494 ZNF444Q8N0Y2 327 aaPredicted RBP11.91□□□□□ -0.5
CHD3-201ENST00000330494 RDXP35241 583 aaKnown RBP11.91□□□□□ -0.5
CHD3-201ENST00000330494 H0YHG0 523 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 C8orf37Q96NL8 207 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 LRPPRCP42704 1394 aaKnown RBP11.91□□□□□ -0.5
CHD3-201ENST00000330494 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
CHD3-201ENST00000330494 HSP90B2PQ58FF3 399 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 WDR78Q5VTH9 848 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 TBC1D9Q6ZT07 1266 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 IFIT3O14879 490 aaKnown RBP11.91□□□□□ -0.5
CHD3-201ENST00000330494 SSFA2P28290 1259 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 PTPRCP08575 1304 aa11.91□□□□□ -0.5
CHD3-201ENST00000330494 RFC4P35249 363 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 TTC21BQ7Z4L5 1316 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 MEIS3Q99687 375 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 HSPA2P54652 639 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 DACH1Q9UI36 760 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 TNNQ9UQP3 1299 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 SLC12A7Q9Y666 1083 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 GOLGA8BA8MQT2 603 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 HSP90AB3PQ58FF7 597 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 ISM2Q6H9L7 571 aa11.9□□□□□ -0.5
CHD3-201ENST00000330494 TFIP11Q9UBB9 837 aaKnown RBP11.9□□□□□ -0.5
CHD3-201ENST00000330494 UBA5Q9GZZ9 404 aa11.9□□□□□ -0.51
CHD3-201ENST00000330494 MAP3K1Q13233 1512 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 C8orf76Q96K31 380 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 KRT24Q2M2I5 525 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 F8W031 263 aaPredicted RBP11.89□□□□□ -0.51
CHD3-201ENST00000330494 DDX46Q7L014 1031 aaKnown RBP11.89□□□□□ -0.51
CHD3-201ENST00000330494 C8orf58Q8NAV2 365 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 PLCD4Q9BRC7 762 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 TMX1Q9H3N1 280 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 UGGT2Q9NYU1 1516 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 LRRC2Q9BYS8 371 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 XAGE3Q8WTP9 111 aa11.89□□□□□ -0.51
CHD3-201ENST00000330494 ATP6V1AP38606 617 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 C16orf71Q8IYS4 520 aaPredicted RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 WASF1Q92558 559 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 ZCRB1Q8TBF4 217 aaKnown RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 COPS6Q7L5N1 327 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 DUOX2Q9NRD8 1548 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 A2MP01023 1474 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 ENOX2Q16206 610 aaKnown RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 ANKRD13DQ6ZTN6 518 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 PANK2Q9BZ23 570 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 MSH6P52701 1360 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 TRAPPC8Q9Y2L5 1435 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 GOLGA8AA7E2F4 631 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 RRP9O43818 475 aaKnown RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 SNRPA1P09661 255 aaKnown RBP11.88□□□□□ -0.51
CHD3-201ENST00000330494 MAP3K11Q16584 847 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 CKAP2LQ8IYA6 745 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 ACBD3Q9H3P7 528 aa11.88□□□□□ -0.51
CHD3-201ENST00000330494 CFAP100Q494V2 611 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 SSRP1Q08945 709 aaKnown RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 EIF4A2Q14240 407 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms