RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ATG3Q9NT62 314 aa12.75□□□□□ -0.37
HMGB3-201ENST00000325307 ANXA1P04083 346 aa12.75□□□□□ -0.37
HMGB3-201ENST00000325307 API5Q9BZZ5 524 aaKnown RBP12.75□□□□□ -0.37
HMGB3-201ENST00000325307 KCNQ2O43526 872 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 G2E3Q7L622 706 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 HEG1Q9ULI3 1381 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 FKBP5Q13451 457 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-201ENST00000325307 DBF4Q9UBU7 674 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-201ENST00000325307 USP16Q9Y5T5 823 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 ARHGAP45Q92619 1136 aa12.74□□□□□ -0.37
HMGB3-201ENST00000325307 THSD7AQ9UPZ6 1657 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 FLIIQ13045 1269 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 DOT1LQ8TEK3 1739 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 PTPRCP08575 1304 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 RXRBP28702 533 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 MYL6BP14649 208 aa12.73□□□□□ -0.37
HMGB3-201ENST00000325307 RBM19Q9Y4C8 960 aaKnown RBP12.73□□□□□ -0.37
HMGB3-201ENST00000325307 KRT27Q7Z3Y8 459 aa12.72□□□□□ -0.37
HMGB3-201ENST00000325307 PHAXQ9H814 394 aaKnown RBP12.72□□□□□ -0.37
HMGB3-201ENST00000325307 SLC4A10Q6U841 1118 aa12.72□□□□□ -0.37
HMGB3-201ENST00000325307 TMEM57Q8N5G2 664 aa12.72□□□□□ -0.37
HMGB3-201ENST00000325307 ITGB4P16144 1822 aa12.72□□□□□ -0.37
HMGB3-201ENST00000325307 PIP4K2AP48426 406 aaPredicted RBP12.71□□□□□ -0.37
HMGB3-201ENST00000325307 PROSER3Q2NL68 480 aa12.71□□□□□ -0.37
HMGB3-201ENST00000325307 MVPQ14764 893 aaKnown RBP12.71□□□□□ -0.37
HMGB3-201ENST00000325307 CCDC136Q96JN2 1154 aa12.71□□□□□ -0.38
HMGB3-201ENST00000325307 F6X3S4 739 aa12.7□□□□□ -0.38
HMGB3-201ENST00000325307 AIMP1Q12904 312 aaKnown RBP12.7□□□□□ -0.38
HMGB3-201ENST00000325307 DDX21Q9NR30 783 aaKnown RBP eCLIP12.7□□□□□ -0.38
HMGB3-201ENST00000325307 HYPKQ9NX55 129 aa12.7□□□□□ -0.38
HMGB3-201ENST00000325307 DNAJC10Q8IXB1 793 aa12.7□□□□□ -0.38
HMGB3-201ENST00000325307 KCPQ6ZWJ8 1503 aa12.7□□□□□ -0.38
HMGB3-201ENST00000325307 SMARCC1Q92922 1105 aaPredicted RBP12.7□□□□□ -0.38
HMGB3-201ENST00000325307 TEX13AQ9BXU3 409 aaPredicted RBP12.7□□□□□ -0.38
HMGB3-201ENST00000325307 ZNF330Q9Y3S2 320 aaPredicted RBP12.7□□□□□ -0.38
HMGB3-201ENST00000325307 MSH5O43196 834 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 STARD3NLO95772 234 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 DDX19BQ9UMR2 479 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 PALLDQ8WX93 1383 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 A1BGP04217 495 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 PTF1AQ7RTS3 328 aa12.69□□□□□ -0.38
HMGB3-201ENST00000325307 ABCC4O15439 1325 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 RGS17Q9UGC6 210 aaPredicted RBP12.68□□□□□ -0.38
HMGB3-201ENST00000325307 C5P01031 1676 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 PAPPAQ13219 1627 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 ATP6V1AP38606 617 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 POTEAQ6S8J7 498 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 FAM196AQ6ZSG2 479 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 LOC102724428A0A0B4J2F2 783 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 SIK1P57059 783 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 PDIA6Q15084 440 aa12.68□□□□□ -0.38
HMGB3-201ENST00000325307 DDX58O95786 925 aaKnown RBP12.67□□□□□ -0.38
HMGB3-201ENST00000325307 XAGE3Q8WTP9 111 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 UBR2Q8IWV8 1755 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 PI4KAP2A4QPH2 592 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 PI4KAP1Q8N8J0 262 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 SLC4A9Q96Q91 983 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 ARXQ96QS3 562 aa12.67□□□□□ -0.38
HMGB3-201ENST00000325307 COPS6Q7L5N1 327 aa12.66□□□□□ -0.38
HMGB3-201ENST00000325307 NPM2Q86SE8 214 aaKnown RBP12.66□□□□□ -0.38
HMGB3-201ENST00000325307 ERBB4Q15303 1308 aa12.66□□□□□ -0.38
HMGB3-201ENST00000325307 RGS12O14924 1447 aa12.66□□□□□ -0.38
HMGB3-201ENST00000325307 NBPF26B4DH59 902 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 CCT4P50991 539 aaKnown RBP12.65□□□□□ -0.38
HMGB3-201ENST00000325307 NBPF14Q5TI25 921 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 NBPF10Q6P3W6 841 aaKnown RBP12.65□□□□□ -0.38
HMGB3-201ENST00000325307 RIC3Q7Z5B4 369 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 NBPF15Q8N660 670 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 TRIM37O94972 964 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 DNAAF4Q8WXU2 420 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 CHMP4BQ9H444 224 aaKnown RBP12.65□□□□□ -0.38
HMGB3-201ENST00000325307 MAP3K2Q9Y2U5 619 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 CACNA1FO60840 1977 aa12.65□□□□□ -0.38
HMGB3-201ENST00000325307 INTS3Q68E01 1043 aaKnown RBP12.65□□□□□ -0.38
HMGB3-201ENST00000325307 CYP19A1P11511 503 aaPredicted RBP12.64□□□□□ -0.39
HMGB3-201ENST00000325307 KCNQ4P56696 695 aa12.64□□□□□ -0.39
HMGB3-201ENST00000325307 KSR2Q6VAB6 950 aa12.64□□□□□ -0.39
HMGB3-201ENST00000325307 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
HMGB3-201ENST00000325307 AAMPQ13685 434 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 ILDR1Q86SU0 546 aaPredicted RBP12.63□□□□□ -0.39
HMGB3-201ENST00000325307 LAMB4A4D0S4 1761 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 ANKRD13DQ6ZTN6 518 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 BRWD3Q6RI45 1802 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 ITPK1Q13572 414 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 SRCIN1Q9C0H9 1055 aa12.63□□□□□ -0.39
HMGB3-201ENST00000325307 ADCY9O60503 1353 aa12.62□□□□□ -0.39
HMGB3-201ENST00000325307 CCNL1Q9UK58 526 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-201ENST00000325307 ZBTB1Q9Y2K1 713 aa12.62□□□□□ -0.39
HMGB3-201ENST00000325307 ZBTB7BO15156 539 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-201ENST00000325307 CRKLP46109 303 aaKnown RBP12.62□□□□□ -0.39
HMGB3-201ENST00000325307 NEXNQ0ZGT2 675 aa12.62□□□□□ -0.39
HMGB3-201ENST00000325307 C1orf115Q9H7X2 142 aa12.62□□□□□ -0.39
HMGB3-201ENST00000325307 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 LRP10Q7Z4F1 713 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 CCDC87Q9NVE4 849 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 NHSQ6T4R5 1651 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 ZBTB3Q9H5J0 574 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms