RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 ATG3Q9NT62 314 aa16.2■□□□□ 0.18
DDX39A-202ENST00000324340 DBF4Q9UBU7 674 aaPredicted RBP16.2■□□□□ 0.18
DDX39A-202ENST00000324340 EIF2S2P20042 333 aaKnown RBP16.19■□□□□ 0.18
DDX39A-202ENST00000324340 PRIM1P49642 420 aaKnown RBP16.19■□□□□ 0.18
DDX39A-202ENST00000324340 AAMPQ13685 434 aa16.19■□□□□ 0.18
DDX39A-202ENST00000324340 MVPQ14764 893 aaKnown RBP16.19■□□□□ 0.18
DDX39A-202ENST00000324340 VSIG10Q8N0Z9 540 aa16.19■□□□□ 0.18
DDX39A-202ENST00000324340 COG6Q9Y2V7 657 aa16.19■□□□□ 0.18
DDX39A-202ENST00000324340 CICQ96RK0 1608 aaPredicted RBP16.19■□□□□ 0.18
DDX39A-202ENST00000324340 G2E3Q7L622 706 aa16.18■□□□□ 0.18
DDX39A-202ENST00000324340 CHPF2Q9P2E5 772 aa16.18■□□□□ 0.18
DDX39A-202ENST00000324340 ASAP1Q9ULH1 1129 aa16.18■□□□□ 0.18
DDX39A-202ENST00000324340 N4BP2Q86UW6 1770 aaPredicted RBP16.18■□□□□ 0.18
DDX39A-202ENST00000324340 FLIIQ13045 1269 aa16.17■□□□□ 0.18
DDX39A-202ENST00000324340 TMEM57Q8N5G2 664 aa16.17■□□□□ 0.18
DDX39A-202ENST00000324340 NECTIN2Q92692 538 aa16.17■□□□□ 0.18
DDX39A-202ENST00000324340 NHSQ6T4R5 1651 aa16.17■□□□□ 0.18
DDX39A-202ENST00000324340 ERBB4Q15303 1308 aa16.17■□□□□ 0.18
DDX39A-202ENST00000324340 A0A0G2JS52 829 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 PDIA6Q15084 440 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 RTL5Q5HYW3 569 aaPredicted RBP16.16■□□□□ 0.18
DDX39A-202ENST00000324340 SEPT12Q8IYM1 358 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 DDX21Q9NR30 783 aaKnown RBP eCLIP16.16■□□□□ 0.18
DDX39A-202ENST00000324340 RGS17Q9UGC6 210 aaPredicted RBP16.16■□□□□ 0.18
DDX39A-202ENST00000324340 USP16Q9Y5T5 823 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 PXDNLA1KZ92 1463 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 ZNF831Q5JPB2 1677 aa16.16■□□□□ 0.18
DDX39A-202ENST00000324340 INTS3Q68E01 1043 aaKnown RBP16.15■□□□□ 0.18
DDX39A-202ENST00000324340 HYPKQ9NX55 129 aa16.15■□□□□ 0.18
DDX39A-202ENST00000324340 DDX19BQ9UMR2 479 aa16.15■□□□□ 0.18
DDX39A-202ENST00000324340 RBM6P78332 1123 aaKnown RBP16.14■□□□□ 0.17
DDX39A-202ENST00000324340 SYTL4Q96C24 671 aaPredicted RBP16.14■□□□□ 0.17
DDX39A-202ENST00000324340 TEX13AQ9BXU3 409 aaPredicted RBP16.14■□□□□ 0.17
DDX39A-202ENST00000324340 PHAXQ9H814 394 aaKnown RBP16.14■□□□□ 0.17
DDX39A-202ENST00000324340 SBF2Q86WG5 1849 aa16.14■□□□□ 0.17
DDX39A-202ENST00000324340 TJP1Q07157 1748 aa16.14■□□□□ 0.17
DDX39A-202ENST00000324340 BRWD3Q6RI45 1802 aa16.14■□□□□ 0.17
DDX39A-202ENST00000324340 PTCD1O75127 700 aaKnown RBP16.13■□□□□ 0.17
DDX39A-202ENST00000324340 PROSER3Q2NL68 480 aa16.13■□□□□ 0.17
DDX39A-202ENST00000324340 LRP10Q7Z4F1 713 aa16.13■□□□□ 0.17
DDX39A-202ENST00000324340 ACSBG1Q96GR2 724 aa16.13■□□□□ 0.17
DDX39A-202ENST00000324340 FKBP5Q13451 457 aaPredicted RBP16.13■□□□□ 0.17
DDX39A-202ENST00000324340 ITPRIPQ8IWB1 547 aa16.13■□□□□ 0.17
DDX39A-202ENST00000324340 IPO9Q96P70 1041 aaKnown RBP16.13■□□□□ 0.17
DDX39A-202ENST00000324340 KCNQ2O43526 872 aa16.12■□□□□ 0.17
DDX39A-202ENST00000324340 ANP32AP39687 249 aaKnown RBP16.12■□□□□ 0.17
DDX39A-202ENST00000324340 B4GALNT3Q6L9W6 998 aa16.12■□□□□ 0.17
DDX39A-202ENST00000324340 CCDC136Q96JN2 1154 aa16.12■□□□□ 0.17
DDX39A-202ENST00000324340 CHMP4BQ9H444 224 aaKnown RBP16.12■□□□□ 0.17
DDX39A-202ENST00000324340 ZBTB7BO15156 539 aaPredicted RBP16.11■□□□□ 0.17
DDX39A-202ENST00000324340 ANXA1P04083 346 aa16.11■□□□□ 0.17
DDX39A-202ENST00000324340 UBE2Q2Q8WVN8 375 aa16.11■□□□□ 0.17
DDX39A-202ENST00000324340 SMARCC1Q92922 1105 aaPredicted RBP16.11■□□□□ 0.17
DDX39A-202ENST00000324340 SLC4A9Q96Q91 983 aa16.11■□□□□ 0.17
DDX39A-202ENST00000324340 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
DDX39A-202ENST00000324340 BTAF1O14981 1849 aa16.1■□□□□ 0.17
DDX39A-202ENST00000324340 CCT4P50991 539 aaKnown RBP16.1■□□□□ 0.17
DDX39A-202ENST00000324340 ADCY9O60503 1353 aa16.1■□□□□ 0.17
DDX39A-202ENST00000324340 PALLDQ8WX93 1383 aa16.1■□□□□ 0.17
DDX39A-202ENST00000324340 KAT6BQ8WYB5 2073 aa16.1■□□□□ 0.17
DDX39A-202ENST00000324340 ATP10DQ9P241 1426 aa16.1■□□□□ 0.17
DDX39A-202ENST00000324340 RREB1Q92766 1687 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 F6X3S4 739 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 NBPF14Q5TI25 921 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
DDX39A-202ENST00000324340 DNAJC10Q8IXB1 793 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
DDX39A-202ENST00000324340 RBM42Q9BTD8 480 aaKnown RBP16.09■□□□□ 0.17
DDX39A-202ENST00000324340 KSR2Q6VAB6 950 aa16.08■□□□□ 0.16
DDX39A-202ENST00000324340 KRT27Q7Z3Y8 459 aa16.08■□□□□ 0.16
DDX39A-202ENST00000324340 COL5A3P25940 1745 aaPredicted RBP16.07■□□□□ 0.16
DDX39A-202ENST00000324340 IBTKQ9P2D0 1353 aaPredicted RBP16.07■□□□□ 0.16
DDX39A-202ENST00000324340 PI4KAP2A4QPH2 592 aa16.07■□□□□ 0.16
DDX39A-202ENST00000324340 STARD3NLO95772 234 aa16.07■□□□□ 0.16
DDX39A-202ENST00000324340 DDX58O95786 925 aaKnown RBP16.07■□□□□ 0.16
DDX39A-202ENST00000324340 PI4KAP1Q8N8J0 262 aa16.07■□□□□ 0.16
DDX39A-202ENST00000324340 DNAAF4Q8WXU2 420 aa16.07■□□□□ 0.16
DDX39A-202ENST00000324340 LY75O60449 1722 aa16.07■□□□□ 0.16
DDX39A-202ENST00000324340 LOC102724428A0A0B4J2F2 783 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 A1BGP04217 495 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 CYP19A1P11511 503 aaPredicted RBP16.06■□□□□ 0.16
DDX39A-202ENST00000324340 MYL6BP14649 208 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 RXRBP28702 533 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 SIK1P57059 783 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 FAM182BQ5T319 152 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 FAM196AQ6ZSG2 479 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 COPS6Q7L5N1 327 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 XAGE3Q8WTP9 111 aa16.06■□□□□ 0.16
DDX39A-202ENST00000324340 ANO8Q9HCE9 1232 aaPredicted RBP16.06■□□□□ 0.16
DDX39A-202ENST00000324340 ARFGEF2Q9Y6D5 1785 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 KDM2BQ8NHM5 1336 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 NUP188Q5SRE5 1749 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 SLC4A10Q6U841 1118 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 PTF1AQ7RTS3 328 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 PCDHB15Q9Y5E8 787 aa16.05■□□□□ 0.16
DDX39A-202ENST00000324340 BEND3Q5T5X7 828 aa16.04■□□□□ 0.16
DDX39A-202ENST00000324340 BCL11BQ9C0K0 894 aaPredicted RBP16.04■□□□□ 0.16
DDX39A-202ENST00000324340 ZBTB47Q9UFB7 747 aaPredicted RBP16.04■□□□□ 0.16
DDX39A-202ENST00000324340 MAP3K2Q9Y2U5 619 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms