RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 ZBTB7BO15156 539 aaPredicted RBP19.64■□□□□ 0.74
USH1C-202ENST00000318024 BMP2KLQ5H9B9 411 aa19.64■□□□□ 0.74
USH1C-202ENST00000318024 PCDH11XQ9BZA7 1347 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 PCDH11YQ9BZA8 1340 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 CABP4P57796 275 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 ZNF790Q6PG37 636 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 SLC4A10Q6U841 1118 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 C1orf115Q9H7X2 142 aa19.64■□□□□ 0.73
USH1C-202ENST00000318024 ANXA1P04083 346 aa19.63■□□□□ 0.73
USH1C-202ENST00000318024 CHD1LQ86WJ1 897 aa19.63■□□□□ 0.73
USH1C-202ENST00000318024 CERKQ8TCT0 537 aa19.63■□□□□ 0.73
USH1C-202ENST00000318024 PHAXQ9H814 394 aaKnown RBP19.63■□□□□ 0.73
USH1C-202ENST00000318024 HSP90AB1P08238 724 aaKnown RBP19.63■□□□□ 0.73
USH1C-202ENST00000318024 FLIIQ13045 1269 aa19.63■□□□□ 0.73
USH1C-202ENST00000318024 PTPRCP08575 1304 aa19.62■□□□□ 0.73
USH1C-202ENST00000318024 COL22A1Q8NFW1 1626 aaPredicted RBP19.62■□□□□ 0.73
USH1C-202ENST00000318024 GIGYF1O75420 1035 aaPredicted RBP19.62■□□□□ 0.73
USH1C-202ENST00000318024 CD2BP2O95400 341 aaKnown RBP19.62■□□□□ 0.73
USH1C-202ENST00000318024 FKBP5Q13451 457 aaPredicted RBP19.62■□□□□ 0.73
USH1C-202ENST00000318024 CHPF2Q9P2E5 772 aa19.62■□□□□ 0.73
USH1C-202ENST00000318024 RGS12O14924 1447 aa19.62■□□□□ 0.73
USH1C-202ENST00000318024 CLEC17AQ6ZS10 378 aa19.61■□□□□ 0.73
USH1C-202ENST00000318024 LNPKQ9C0E8 428 aa19.61■□□□□ 0.73
USH1C-202ENST00000318024 SKOR2Q2VWA4 1001 aaPredicted RBP19.6■□□□□ 0.73
USH1C-202ENST00000318024 GBP4Q96PP9 640 aa19.6■□□□□ 0.73
USH1C-202ENST00000318024 COL14A1Q05707 1796 aaKnown RBP19.59■□□□□ 0.73
USH1C-202ENST00000318024 RRP9O43818 475 aaKnown RBP19.59■□□□□ 0.73
USH1C-202ENST00000318024 ZNF496Q96IT1 587 aaPredicted RBP19.59■□□□□ 0.73
USH1C-202ENST00000318024 SOS1Q07889 1333 aaPredicted RBP19.59■□□□□ 0.73
USH1C-202ENST00000318024 INTS3Q68E01 1043 aaKnown RBP19.59■□□□□ 0.73
USH1C-202ENST00000318024 PKD1L3Q7Z443 1732 aa19.58■□□□□ 0.73
USH1C-202ENST00000318024 KDM3BQ7LBC6 1761 aa19.58■□□□□ 0.73
USH1C-202ENST00000318024 PTMSP20962 102 aa19.58■□□□□ 0.73
USH1C-202ENST00000318024 TTC5Q8N0Z6 440 aa19.58■□□□□ 0.73
USH1C-202ENST00000318024 CCDC9Q9Y3X0 531 aaKnown RBP19.58■□□□□ 0.73
USH1C-202ENST00000318024 PLEKHG2Q9H7P9 1386 aa19.58■□□□□ 0.72
USH1C-202ENST00000318024 HOXB7P09629 217 aa19.57■□□□□ 0.72
USH1C-202ENST00000318024 HSP90AA1P07900 732 aaKnown RBP19.57■□□□□ 0.72
USH1C-202ENST00000318024 PROSER3Q2NL68 480 aa19.57■□□□□ 0.72
USH1C-202ENST00000318024 C8orf37Q96NL8 207 aa19.57■□□□□ 0.72
USH1C-202ENST00000318024 ADAMTS7Q9UKP4 1686 aa19.57■□□□□ 0.72
USH1C-202ENST00000318024 HEG1Q9ULI3 1381 aa19.56■□□□□ 0.72
USH1C-202ENST00000318024 SCN11AQ9UI33 1791 aa19.56■□□□□ 0.72
USH1C-202ENST00000318024 PARP4Q9UKK3 1724 aaKnown RBP19.56■□□□□ 0.72
USH1C-202ENST00000318024 IBTKQ9P2D0 1353 aaPredicted RBP19.56■□□□□ 0.72
USH1C-202ENST00000318024 K7ELQ4 463 aaPredicted RBP19.56■□□□□ 0.72
USH1C-202ENST00000318024 NKX1-1Q15270 411 aaPredicted RBP19.56■□□□□ 0.72
USH1C-202ENST00000318024 PPP1R9BQ96SB3 815 aa19.56■□□□□ 0.72
USH1C-202ENST00000318024 GCC1Q96CN9 775 aa19.55■□□□□ 0.72
USH1C-202ENST00000318024 TBC1D9Q6ZT07 1266 aa19.55■□□□□ 0.72
USH1C-202ENST00000318024 EXOC5O00471 708 aa19.54■□□□□ 0.72
USH1C-202ENST00000318024 NGLY1Q96IV0 654 aa19.54■□□□□ 0.72
USH1C-202ENST00000318024 MEIS3Q99687 375 aa19.54■□□□□ 0.72
USH1C-202ENST00000318024 DBF4Q9UBU7 674 aaPredicted RBP19.54■□□□□ 0.72
USH1C-202ENST00000318024 USP16Q9Y5T5 823 aa19.54■□□□□ 0.72
USH1C-202ENST00000318024 SIPA1L3O60292 1781 aaPredicted RBP19.54■□□□□ 0.72
USH1C-202ENST00000318024 ERVV-2B6SEH9 535 aa19.53■□□□□ 0.72
USH1C-202ENST00000318024 PIP4K2AP48426 406 aaPredicted RBP19.53■□□□□ 0.72
USH1C-202ENST00000318024 HSP90AA2PQ14568 343 aaPredicted RBP19.53■□□□□ 0.72
USH1C-202ENST00000318024 SIRT2Q8IXJ6 389 aa19.53■□□□□ 0.72
USH1C-202ENST00000318024 SPATA31A1Q5TZJ5 1347 aa19.53■□□□□ 0.72
USH1C-202ENST00000318024 PTCD1O75127 700 aaKnown RBP19.52■□□□□ 0.72
USH1C-202ENST00000318024 CHMP4BQ9H444 224 aaKnown RBP19.52■□□□□ 0.72
USH1C-202ENST00000318024 JCADQ9P266 1359 aa19.52■□□□□ 0.72
USH1C-202ENST00000318024 MYL6BP14649 208 aa19.52■□□□□ 0.71
USH1C-202ENST00000318024 FMNL2Q96PY5 1086 aa19.52■□□□□ 0.71
USH1C-202ENST00000318024 RBM42Q9BTD8 480 aaKnown RBP19.52■□□□□ 0.71
USH1C-202ENST00000318024 PI4KAP2A4QPH2 592 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 SSFA2P28290 1259 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 HSPA1LP34931 641 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 AIMP1Q12904 312 aaKnown RBP19.51■□□□□ 0.71
USH1C-202ENST00000318024 PI4KAP1Q8N8J0 262 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 DISP2A7MBM2 1401 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 MRC1P22897 1456 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 SNRPA1P09661 255 aaKnown RBP19.51■□□□□ 0.71
USH1C-202ENST00000318024 CCT4P50991 539 aaKnown RBP19.51■□□□□ 0.71
USH1C-202ENST00000318024 ANKRD45Q5TZF3 282 aa19.51■□□□□ 0.71
USH1C-202ENST00000318024 CCDC173Q0VFZ6 552 aa19.5■□□□□ 0.71
USH1C-202ENST00000318024 PDIA6Q15084 440 aa19.5■□□□□ 0.71
USH1C-202ENST00000318024 CHMP4AQ9BY43 222 aa19.5■□□□□ 0.71
USH1C-202ENST00000318024 KLHL40Q2TBA0 621 aa19.49■□□□□ 0.71
USH1C-202ENST00000318024 TRIM44Q96DX7 344 aaPredicted RBP19.49■□□□□ 0.71
USH1C-202ENST00000318024 TMOD3Q9NYL9 352 aa19.49■□□□□ 0.71
USH1C-202ENST00000318024 PLCH1Q4KWH8 1693 aa19.49■□□□□ 0.71
USH1C-202ENST00000318024 GLIPR1L2Q4G1C9 344 aa19.49■□□□□ 0.71
USH1C-202ENST00000318024 SYTL4Q96C24 671 aaPredicted RBP19.49■□□□□ 0.71
USH1C-202ENST00000318024 BAG4O95429 457 aaKnown RBP19.48■□□□□ 0.71
USH1C-202ENST00000318024 PIGBQ92521 554 aa19.48■□□□□ 0.71
USH1C-202ENST00000318024 SPATA31A5Q5VU36 1347 aa19.48■□□□□ 0.71
USH1C-202ENST00000318024 SPATA31A7Q8IWB4 1347 aa19.48■□□□□ 0.71
USH1C-202ENST00000318024 SHANK3Q9BYB0 1731 aa19.48■□□□□ 0.71
USH1C-202ENST00000318024 UNC5CLQ8IV45 518 aa19.48■□□□□ 0.71
USH1C-202ENST00000318024 CYP2E1P05181 493 aaPredicted RBP19.47■□□□□ 0.71
USH1C-202ENST00000318024 TPM2P07951 284 aa19.47■□□□□ 0.71
USH1C-202ENST00000318024 DDB1Q16531 1140 aa19.47■□□□□ 0.71
USH1C-202ENST00000318024 DDX21Q9NR30 783 aaKnown RBP eCLIP19.47■□□□□ 0.71
USH1C-202ENST00000318024 ASAP1Q9ULH1 1129 aa19.47■□□□□ 0.71
USH1C-202ENST00000318024 SLIT2O94813 1529 aa19.47■□□□□ 0.71
USH1C-202ENST00000318024 AK9Q5TCS8 1911 aa19.47■□□□□ 0.71
USH1C-202ENST00000318024 A0A0G2JS52 829 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms