RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ATP10DQ9P241 1426 aa12.64□□□□□ -0.39
COL3A1-202ENST00000317840 IFIT2P09913 472 aaKnown RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 TAF7Q15545 349 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 PHAXQ9H814 394 aaKnown RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 TAOK2Q9UL54 1235 aa12.64□□□□□ -0.39
COL3A1-202ENST00000317840 IBTKQ9P2D0 1353 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 GADD45BO75293 160 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 CLASRPQ8N2M8 674 aaKnown RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 ZNF830Q96NB3 372 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 PRDM11Q9NQV5 511 aa12.64□□□□□ -0.39
COL3A1-202ENST00000317840 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 BRD1O95696 1058 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 MYL6BP14649 208 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 CASTP20810 708 aaKnown RBP12.63□□□□□ -0.39
COL3A1-202ENST00000317840 ANAPC15P60006 121 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 TTC5Q8N0Z6 440 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 GPATCH3Q96I76 525 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 CPSF1Q10570 1443 aaKnown RBP12.63□□□□□ -0.39
COL3A1-202ENST00000317840 MAP2P11137 1827 aaKnown RBP12.63□□□□□ -0.39
COL3A1-202ENST00000317840 BTBD11A6QL63 1104 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 CPA1P15085 419 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 TOM1L2Q6ZVM7 507 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 RHPN1Q8TCX5 695 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 RUFY2Q8WXA3 655 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 OSBPL3Q9H4L5 887 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 CNPY2Q9Y2B0 182 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 SIGLEC1Q9BZZ2 1709 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 PLEKHG3A1L390 1219 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 HCLS1P14317 486 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-202ENST00000317840 ZKSCAN1P17029 563 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-202ENST00000317840 FGD1P98174 961 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 CCDC83Q8IWF9 413 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 DRC7Q8IY82 874 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 KIF1BPQ96EK5 621 aa12.63□□□□□ -0.39
COL3A1-202ENST00000317840 HS1BP3Q53T59 392 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 JAKMIP1Q96N16 626 aaKnown RBP12.62□□□□□ -0.39
COL3A1-202ENST00000317840 PDCL3Q9H2J4 239 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 PI4KAP2A4QPH2 592 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 PI4KAP1Q8N8J0 262 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 ZMYND15Q9H091 742 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 CLTCQ00610 1675 aaKnown RBP12.62□□□□□ -0.39
COL3A1-202ENST00000317840 DIP2BQ9P265 1576 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 KAT6BQ8WYB5 2073 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 GCP02774 474 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 HOXC9P31274 260 aa12.62□□□□□ -0.39
COL3A1-202ENST00000317840 INTS4Q96HW7 963 aaKnown RBP12.62□□□□□ -0.39
COL3A1-202ENST00000317840 HSP90AB4PQ58FF6 505 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 KCNH5Q8NCM2 988 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 ANKRD24Q8TF21 1146 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 USP44Q9H0E7 712 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 PRPF40BQ6NWY9 871 aaKnown RBP12.61□□□□□ -0.39
COL3A1-202ENST00000317840 FERMT3Q86UX7 667 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 SOS1Q07889 1333 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-202ENST00000317840 CPS1P31327 1500 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 PIP4K2AP48426 406 aaPredicted RBP12.61□□□□□ -0.39
COL3A1-202ENST00000317840 LIMCH1Q9UPQ0 1083 aa12.61□□□□□ -0.39
COL3A1-202ENST00000317840 FLT4P35916 1363 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 STX6O43752 255 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 SPC24Q8NBT2 197 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 NAP1L2Q9ULW6 460 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-202ENST00000317840 TTC21AQ8NDW8 1320 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 RAB11FIP3O75154 756 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 TATP17735 454 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-202ENST00000317840 AK2P54819 239 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 CHAF1AQ13111 956 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-202ENST00000317840 SLC39A6Q13433 755 aa12.6□□□□□ -0.39
COL3A1-202ENST00000317840 CCDC183Q5T5S1 534 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 RIC3Q7Z5B4 369 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 NBPF7P0C2Y1 421 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 GIMAP6Q6P9H5 292 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 DNAAF4Q8WXU2 420 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 TTC12Q9H892 705 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 PDRG1Q9NUG6 133 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 CHPF2Q9P2E5 772 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 CYP46A1Q9Y6A2 500 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 NUTM2BA6NNL0 878 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 NUTM2EB1AL46 878 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 PTCD1O75127 700 aaKnown RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 ADCY5O95622 1261 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 NUTM2AQ8IVF1 878 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-202ENST00000317840 FAM184AQ8NB25 1140 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 PKNOX2Q96KN3 472 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 SIL1Q9H173 461 aa12.59□□□□□ -0.39
COL3A1-202ENST00000317840 ZSCAN22P10073 491 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-202ENST00000317840 IL17REQ8NFR9 667 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 CHMP4AQ9BY43 222 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 LGR6Q9HBX8 967 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 SETD1BQ9UPS6 1966 aaKnown RBP12.58□□□□□ -0.4
COL3A1-202ENST00000317840 TMEM131LA2VDJ0 1609 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 PLEKHG1Q9ULL1 1385 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 GLRX3O76003 335 aaKnown RBP12.58□□□□□ -0.4
COL3A1-202ENST00000317840 SYT1P21579 422 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 NBPF6Q5VWK0 638 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 AACSQ86V21 672 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 NBPF4Q96M43 638 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL3A1-202ENST00000317840 MCM5P33992 734 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 CUL4AQ13619 759 aa12.58□□□□□ -0.4
COL3A1-202ENST00000317840 JARID2Q92833 1246 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms