RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 OSBPL3Q9H4L5 887 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 AOX1Q06278 1338 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 CAVIN1Q6NZI2 390 aaKnown RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 KIF18AQ8NI77 898 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 TOMM22Q9NS69 142 aa8.01□□□□□ -1.13
ZNF540-201ENST00000316433 COL22A1Q8NFW1 1626 aaPredicted RBP8.01□□□□□ -1.13
ZNF540-201ENST00000316433 ZNF142P52746 1687 aaPredicted RBP8□□□□□ -1.13
ZNF540-201ENST00000316433 SGSM3Q96HU1 749 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8□□□□□ -1.13
ZNF540-201ENST00000316433 SIPA1L2Q9P2F8 1722 aaPredicted RBP8□□□□□ -1.13
ZNF540-201ENST00000316433 KDRP35968 1356 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 GOLGA6L6A8MZA4 724 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 TRIM27P14373 513 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 TDO2P48775 406 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 KIF13AQ9H1H9 1805 aa8□□□□□ -1.13
ZNF540-201ENST00000316433 ADGRL3Q9HAR2 1447 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 GYS2P54840 703 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 NBPF11Q86T75 865 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 KIF2CQ99661 725 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 ANKARQ7Z5J8 1434 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 REC8O95072 547 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 MTHFSP49914 203 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 SRPK2P78362 688 aaKnown RBP7.99□□□□□ -1.13
ZNF540-201ENST00000316433 INTS3Q68E01 1043 aaKnown RBP7.99□□□□□ -1.13
ZNF540-201ENST00000316433 MNS1Q8NEH6 495 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 CWC22Q9HCG8 908 aaKnown RBP7.99□□□□□ -1.13
ZNF540-201ENST00000316433 NWD1Q149M9 1564 aa7.99□□□□□ -1.13
ZNF540-201ENST00000316433 PTPRCP08575 1304 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 DNAJC21Q5F1R6 531 aaKnown RBP7.98□□□□□ -1.13
ZNF540-201ENST00000316433 MRPL50Q8N5N7 158 aaKnown RBP7.98□□□□□ -1.13
ZNF540-201ENST00000316433 CXorf56Q9H5V9 222 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 MED4Q9NPJ6 270 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 SUFUQ9UMX1 484 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 MRC1P22897 1456 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 ZBTB7BO15156 539 aaPredicted RBP7.98□□□□□ -1.13
ZNF540-201ENST00000316433 BAG4O95429 457 aaKnown RBP7.98□□□□□ -1.13
ZNF540-201ENST00000316433 NBPF9Q3BBW0 867 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 MUM1L1Q5H9M0 696 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 C10orf67Q8IYJ2 551 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 JRKLQ9Y4A0 524 aa7.98□□□□□ -1.13
ZNF540-201ENST00000316433 NFE2L2Q16236 605 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 LRSAM1Q6UWE0 723 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 C17orf53Q8N3J3 647 aaPredicted RBP7.97□□□□□ -1.13
ZNF540-201ENST00000316433 PANK1Q8TE04 598 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 FAM53CQ9NYF3 392 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 POLKQ9UBT6 870 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 COG6Q9Y2V7 657 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 TTC36A6NLP5 189 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 MYO1CO00159 1063 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 FYB1O15117 783 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 TNNT1P13805 278 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 SSFA2P28290 1259 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 GNAI1P63096 354 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 DRC1Q96MC2 740 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 RBM28Q9NW13 759 aaKnown RBP7.97□□□□□ -1.13
ZNF540-201ENST00000316433 CCDC189A1A4V9 331 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 CRB1P82279 1406 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 SETQ01105 290 aaPredicted RBP7.97□□□□□ -1.13
ZNF540-201ENST00000316433 NBPF10Q6P3W6 841 aaKnown RBP7.97□□□□□ -1.13
ZNF540-201ENST00000316433 CHD1LQ86WJ1 897 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 GOLGA6L1Q8N7Z2 621 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 API5Q9BZZ5 524 aaKnown RBP7.97□□□□□ -1.13
ZNF540-201ENST00000316433 ZNF446Q9NWS9 450 aa7.97□□□□□ -1.13
ZNF540-201ENST00000316433 AK9Q5TCS8 1911 aa7.96□□□□□ -1.13
ZNF540-201ENST00000316433 PARP4Q9UKK3 1724 aaKnown RBP7.96□□□□□ -1.13
ZNF540-201ENST00000316433 RABEP1Q15276 862 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 SYT10Q6XYQ8 523 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 CCDC91Q7Z6B0 441 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 NFATC2IPQ8NCF5 419 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 TRIM66O15016 1216 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 HTATSF1O43719 755 aaKnown RBP7.96□□□□□ -1.14
ZNF540-201ENST00000316433 HMGB1P09429 215 aaKnown RBP7.96□□□□□ -1.14
ZNF540-201ENST00000316433 CCDC146Q8IYE0 955 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 SSH1Q8WYL5 1049 aa7.96□□□□□ -1.14
ZNF540-201ENST00000316433 NOL10Q9BSC4 688 aaKnown RBP7.96□□□□□ -1.14
ZNF540-201ENST00000316433 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.96□□□□□ -1.14
ZNF540-201ENST00000316433 SBNO1A3KN83 1393 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 TSGA10IPQ3SY00 556 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 DCTPP1Q9H773 170 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 TTC21BQ7Z4L5 1316 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 SALL3Q9BXA9 1300 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 DIAPH1O60610 1272 aaKnown RBP7.95□□□□□ -1.14
ZNF540-201ENST00000316433 ATP2B1P20020 1258 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 IL13P35225 146 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 SSR1P43307 286 aaKnown RBP7.95□□□□□ -1.14
ZNF540-201ENST00000316433 MCM2P49736 904 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 ANAPC15P60006 121 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 SLC12A5Q9H2X9 1139 aa7.95□□□□□ -1.14
ZNF540-201ENST00000316433 GSCP56915 257 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 SART3Q15020 963 aaKnown RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 LRCH2Q5VUJ6 765 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 HDGFL2Q7Z4V5 671 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 RPAP2Q8IXW5 612 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 DEF6Q9H4E7 631 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 TTC12Q9H892 705 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 MSH6P52701 1360 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 PLEKHG1Q9ULL1 1385 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 DDX60Q8IY21 1712 aaKnown RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 A0A1B0GUL7 405 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms