RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 DBF4Q9UBU7 674 aaPredicted RBP9.41□□□□□ -0.9
TRIM55-202ENST00000315962 SRGAP3O43295 1099 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 COPS6Q7L5N1 327 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 KLHDC4Q8TBB5 520 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 C22orf23Q9BZE7 217 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 C9orf78Q9NZ63 289 aaPredicted RBP9.4□□□□□ -0.9
TRIM55-202ENST00000315962 GOLGA6L3A6NEY3 463 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 PPP1R42Q7Z4L9 355 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 NUTM1Q86Y26 1132 aa9.4□□□□□ -0.9
TRIM55-202ENST00000315962 RPAP2Q8IXW5 612 aaPredicted RBP9.4□□□□□ -0.9
TRIM55-202ENST00000315962 ZCRB1Q8TBF4 217 aaKnown RBP9.4□□□□□ -0.9
TRIM55-202ENST00000315962 SOS2Q07890 1332 aaPredicted RBP9.4□□□□□ -0.91
TRIM55-202ENST00000315962 SURF6O75683 361 aaKnown RBP9.39□□□□□ -0.91
TRIM55-202ENST00000315962 MCM4P33991 863 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 TBC1D9Q6ZT07 1266 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 RIC3Q7Z5B4 369 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 RBM42Q9BTD8 480 aaKnown RBP9.39□□□□□ -0.91
TRIM55-202ENST00000315962 PA2G4Q9UQ80 394 aaKnown RBP9.39□□□□□ -0.91
TRIM55-202ENST00000315962 ATP10DQ9P241 1426 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 BEND3Q5T5X7 828 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 XAGE3Q8WTP9 111 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 SIL1Q9H173 461 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 RGPD5Q99666 1765 aa9.39□□□□□ -0.91
TRIM55-202ENST00000315962 A1BGP04217 495 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 CCDC9Q9Y3X0 531 aaKnown RBP9.38□□□□□ -0.91
TRIM55-202ENST00000315962 KDM6AO15550 1401 aaPredicted RBP9.38□□□□□ -0.91
TRIM55-202ENST00000315962 TRAK2O60296 914 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 PDIA6Q15084 440 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 DCAF5Q96JK2 942 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 PKNOX2Q96KN3 472 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 WDR17Q8IZU2 1322 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 SLIT3O75094 1523 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 GNAI3P08754 354 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 RILPL2Q969X0 211 aa9.38□□□□□ -0.91
TRIM55-202ENST00000315962 ADCY9O60503 1353 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 HMMRO75330 724 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 IL2RBP14784 551 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 OS9Q13438 667 aaPredicted RBP9.37□□□□□ -0.91
TRIM55-202ENST00000315962 STRCQ7RTU9 1775 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 TRIM6-TRIM34B2RNG4 842 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 SDSP20132 328 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 MYD88Q99836 296 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.37□□□□□ -0.91
TRIM55-202ENST00000315962 KAT6BQ8WYB5 2073 aa9.37□□□□□ -0.91
TRIM55-202ENST00000315962 SOS1Q07889 1333 aaPredicted RBP9.37□□□□□ -0.91
TRIM55-202ENST00000315962 SRCAPQ6ZRS2 3230 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 CAMTA1Q9Y6Y1 1673 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 BMP2KLQ5H9B9 411 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 ASAP1Q9ULH1 1129 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 TRPM3Q9HCF6 1732 aaPredicted RBP9.36□□□□□ -0.91
TRIM55-202ENST00000315962 DCCP43146 1447 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 CD2BP2O95400 341 aaKnown RBP9.36□□□□□ -0.91
TRIM55-202ENST00000315962 ATP8B2P98198 1209 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 CCDC85AQ96PX6 553 aaPredicted RBP9.36□□□□□ -0.91
TRIM55-202ENST00000315962 LRRCC1Q9C099 1032 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 ZBTB3Q9H5J0 574 aa9.36□□□□□ -0.91
TRIM55-202ENST00000315962 L1TD1Q5T7N2 865 aaKnown RBP9.35□□□□□ -0.91
TRIM55-202ENST00000315962 KSR2Q6VAB6 950 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 UNC5CLQ8IV45 518 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 AK9Q5TCS8 1911 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 UTRNP46939 3433 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 IGKV5-2P06315 115 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 HSP90AA1P07900 732 aaKnown RBP9.35□□□□□ -0.91
TRIM55-202ENST00000315962 HSCBQ8IWL3 235 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 BABAM1Q9NWV8 329 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 ERBB4Q15303 1308 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 SNRPA1P09661 255 aaKnown RBP9.35□□□□□ -0.91
TRIM55-202ENST00000315962 PDE1AP54750 535 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 TTC22Q5TAA0 569 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 TTLL7Q6ZT98 887 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 ANKRD13DQ6ZTN6 518 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 ACSBG1Q96GR2 724 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 FMNL2Q96PY5 1086 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 DDX21Q9NR30 783 aaKnown RBP eCLIP9.35□□□□□ -0.91
TRIM55-202ENST00000315962 PODXL2Q9NZ53 605 aa9.35□□□□□ -0.91
TRIM55-202ENST00000315962 UBE3BQ7Z3V4 1068 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 GAS2L3Q86XJ1 694 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 BICC1Q9H694 974 aaKnown RBP9.34□□□□□ -0.91
TRIM55-202ENST00000315962 CHMP3Q9Y3E7 222 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 NBPF26B4DH59 902 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 KCNQ4P56696 695 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 EPHA10Q5JZY3 1008 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 NBPF14Q5TI25 921 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 NBPF10Q6P3W6 841 aaKnown RBP9.34□□□□□ -0.91
TRIM55-202ENST00000315962 NBPF15Q8N660 670 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 SUCLG2Q96I99 432 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 HYPKQ9NX55 129 aa9.34□□□□□ -0.91
TRIM55-202ENST00000315962 HSP90AB1P08238 724 aaKnown RBP9.33□□□□□ -0.92
TRIM55-202ENST00000315962 FAM182BQ5T319 152 aa9.33□□□□□ -0.92
TRIM55-202ENST00000315962 CHMP5Q9NZZ3 219 aa9.33□□□□□ -0.92
TRIM55-202ENST00000315962 KAZALD1Q96I82 304 aa9.33□□□□□ -0.92
TRIM55-202ENST00000315962 CHAMP1Q96JM3 812 aa9.33□□□□□ -0.92
TRIM55-202ENST00000315962 PCDH11XQ9BZA7 1347 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 PCDH11YQ9BZA8 1340 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 MX1P20591 662 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 PIGBQ92521 554 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 CARD10Q9BWT7 1032 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 NDUFB9Q9Y6M9 179 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 ALS2Q96Q42 1657 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 NCOA3Q9Y6Q9 1424 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms