RNA–Protein interactions for RNA: ENST00000313863.10

MKS1-201, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5 BASIC

Gene MKS1, Length 2,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-201ENST00000313863 TSHZ3Q63HK5 1081 aa16.71■□□□□ 0.27
MKS1-201ENST00000313863 SSH3Q8TE77 659 aa16.71■□□□□ 0.27
MKS1-201ENST00000313863 CCDC183Q5T5S1 534 aa16.7■□□□□ 0.26
MKS1-201ENST00000313863 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.7■□□□□ 0.26
MKS1-201ENST00000313863 UQCRHLA0A096LP55 91 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 UQCRHP07919 91 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 HSP90AB4PQ58FF6 505 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 RNF214Q8ND24 703 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 EYA1Q99502 592 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 CEP170BQ9Y4F5 1589 aaPredicted RBP16.69■□□□□ 0.26
MKS1-201ENST00000313863 RAD50Q92878 1312 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 NOL8Q76FK4 1167 aaKnown RBP16.69■□□□□ 0.26
MKS1-201ENST00000313863 USP48Q86UV5 1035 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 MAP3K5Q99683 1374 aa16.69■□□□□ 0.26
MKS1-201ENST00000313863 CNTROBQ8N137 903 aa16.68■□□□□ 0.26
MKS1-201ENST00000313863 UPF3BQ9BZI7 483 aaKnown RBP16.68■□□□□ 0.26
MKS1-201ENST00000313863 TAF7Q15545 349 aaPredicted RBP16.68■□□□□ 0.26
MKS1-201ENST00000313863 KIF1BPQ96EK5 621 aa16.68■□□□□ 0.26
MKS1-201ENST00000313863 CHAMP1Q96JM3 812 aa16.68■□□□□ 0.26
MKS1-201ENST00000313863 USP44Q9H0E7 712 aa16.68■□□□□ 0.26
MKS1-201ENST00000313863 SOX12O15370 315 aa16.67■□□□□ 0.26
MKS1-201ENST00000313863 USP54Q70EL1 1684 aa16.67■□□□□ 0.26
MKS1-201ENST00000313863 RPAP1Q9BWH6 1393 aaPredicted RBP16.67■□□□□ 0.26
MKS1-201ENST00000313863 PIK3C2AO00443 1686 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 SGSM2O43147 1006 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 ZSCAN22P10073 491 aaPredicted RBP16.66■□□□□ 0.26
MKS1-201ENST00000313863 UBE2HP62256 183 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 POLA2Q14181 598 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 LIMCH1Q9UPQ0 1083 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 CRYBG1Q9Y4K1 1723 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 PDIA4P13667 645 aaKnown RBP16.66■□□□□ 0.26
MKS1-201ENST00000313863 RUFY2Q8WXA3 655 aa16.66■□□□□ 0.26
MKS1-201ENST00000313863 SURF6O75683 361 aaKnown RBP16.65■□□□□ 0.26
MKS1-201ENST00000313863 UNC5CLQ8IV45 518 aa16.65■□□□□ 0.26
MKS1-201ENST00000313863 NGDNQ8NEJ9 315 aaKnown RBP16.65■□□□□ 0.26
MKS1-201ENST00000313863 RHPN1Q8TCX5 695 aa16.65■□□□□ 0.26
MKS1-201ENST00000313863 GADD45BO75293 160 aaPredicted RBP16.64■□□□□ 0.25
MKS1-201ENST00000313863 HDGFL1Q5TGJ6 251 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 ZSCAN31Q96LW9 406 aaPredicted RBP16.64■□□□□ 0.25
MKS1-201ENST00000313863 TTC14Q96N46 770 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 IL1RAPL2Q9NP60 686 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 SMC3Q9UQE7 1217 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 SNX14Q9Y5W7 946 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 TTC41PQ6P2S7 1318 aa16.64■□□□□ 0.25
MKS1-201ENST00000313863 DIP2AQ14689 1571 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 NUTM2FA1L443 756 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 STX6O43752 255 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 HOXB7P09629 217 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 HMGN5P82970 282 aaKnown RBP16.63■□□□□ 0.25
MKS1-201ENST00000313863 PPP1R42Q7Z4L9 355 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 NUTM1Q86Y26 1132 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 PI4K2BQ8TCG2 481 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 FAM13BQ9NYF5 915 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
MKS1-201ENST00000313863 RGPD8O14715 1765 aaPredicted RBP16.63■□□□□ 0.25
MKS1-201ENST00000313863 PRIMPOLQ96LW4 560 aa16.63■□□□□ 0.25
MKS1-201ENST00000313863 LSG1Q9H089 658 aaKnown RBP16.63■□□□□ 0.25
MKS1-201ENST00000313863 USP42Q9H9J4 1324 aaKnown RBP16.63■□□□□ 0.25
MKS1-201ENST00000313863 CHD2O14647 1828 aaKnown RBP16.63■□□□□ 0.25
MKS1-201ENST00000313863 TPM3P06753 285 aa16.62■□□□□ 0.25
MKS1-201ENST00000313863 RBM10P98175 930 aaKnown RBP16.62■□□□□ 0.25
MKS1-201ENST00000313863 SH2B1Q9NRF2 756 aaPredicted RBP16.62■□□□□ 0.25
MKS1-201ENST00000313863 HDAC5Q9UQL6 1122 aa16.62■□□□□ 0.25
MKS1-201ENST00000313863 GLRX3O76003 335 aaKnown RBP16.61■□□□□ 0.25
MKS1-201ENST00000313863 F13A1P00488 732 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 PIBF1Q8WXW3 757 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 NECTIN2Q92692 538 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 GPATCH3Q96I76 525 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 GDPD2Q9HCC8 539 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 SRGAP3O43295 1099 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 AK2P54819 239 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 NWD1Q149M9 1564 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 ANKARQ7Z5J8 1434 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 IL17REQ8NFR9 667 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 EID1Q9Y6B2 187 aa16.61■□□□□ 0.25
MKS1-201ENST00000313863 SYT1P21579 422 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 LTKP29376 864 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 HOXC9P31274 260 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 DNTTIP2Q5QJE6 756 aaKnown RBP16.6■□□□□ 0.25
MKS1-201ENST00000313863 TM6SF1Q9BZW5 370 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 DIAPH3Q9NSV4 1193 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 CNPY2Q9Y2B0 182 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 FOXD4L6Q3SYB3 417 aaPredicted RBP16.6■□□□□ 0.25
MKS1-201ENST00000313863 PLPPR3Q6T4P5 718 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 FOXD4L3Q6VB84 417 aaPredicted RBP16.6■□□□□ 0.25
MKS1-201ENST00000313863 TBX22Q9Y458 520 aa16.6■□□□□ 0.25
MKS1-201ENST00000313863 SLIT1O75093 1534 aa16.59■□□□□ 0.25
MKS1-201ENST00000313863 KDM3BQ7LBC6 1761 aa16.59■□□□□ 0.25
MKS1-201ENST00000313863 NLRP6P59044 892 aa16.59■□□□□ 0.25
MKS1-201ENST00000313863 VPS53Q5VIR6 699 aa16.59■□□□□ 0.25
MKS1-201ENST00000313863 MARF1Q9Y4F3 1742 aaKnown RBP16.59■□□□□ 0.25
MKS1-201ENST00000313863 ADCY5O95622 1261 aa16.58■□□□□ 0.25
MKS1-201ENST00000313863 RUFY3Q7L099 469 aa16.58■□□□□ 0.25
MKS1-201ENST00000313863 ERC1Q8IUD2 1116 aa16.58■□□□□ 0.25
MKS1-201ENST00000313863 MYRIPQ8NFW9 859 aa16.58■□□□□ 0.25
MKS1-201ENST00000313863 DNAAF4Q8WXU2 420 aa16.58■□□□□ 0.24
MKS1-201ENST00000313863 IL25Q9H293 177 aa16.58■□□□□ 0.24
MKS1-201ENST00000313863 USP25Q9UHP3 1055 aa16.58■□□□□ 0.24
MKS1-201ENST00000313863 ARHGAP23Q9P227 1491 aa16.58■□□□□ 0.24
MKS1-201ENST00000313863 KDM4AO75164 1064 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms