RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TMX1Q9H3N1 280 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 CCDC160A6NGH7 325 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 CKAP2LQ8IYA6 745 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 FERMT1Q9BQL6 677 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 TUBB4BP68371 445 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 WDR66Q8TBY9 1149 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 USP5P45974 858 aa15.99■□□□□ 0.15
CSPG4-201ENST00000308508 GLRX3O76003 335 aaKnown RBP15.98■□□□□ 0.15
CSPG4-201ENST00000308508 KIF4AO95239 1232 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 CEP126Q9P2H0 1117 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 OPA1O60313 960 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 TTC31Q49AM3 519 aaPredicted RBP15.98■□□□□ 0.15
CSPG4-201ENST00000308508 ZFP91Q96JP5 570 aaPredicted RBP15.98■□□□□ 0.15
CSPG4-201ENST00000308508 RSPH14Q9UHP6 348 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 KANK3Q6NY19 840 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 ABTB2Q8N961 1025 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 NAP1L3Q99457 506 aaPredicted RBP15.98■□□□□ 0.15
CSPG4-201ENST00000308508 GNG11P61952 73 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 CPLX3Q8WVH0 158 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 LRP2BPQ9P2M1 347 aa15.98■□□□□ 0.15
CSPG4-201ENST00000308508 MTIF2P46199 727 aaKnown RBP15.97■□□□□ 0.15
CSPG4-201ENST00000308508 PRPF4BQ13523 1007 aaKnown RBP15.97■□□□□ 0.15
CSPG4-201ENST00000308508 KIF1BPQ96EK5 621 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 PLVAPQ9BX97 442 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 CEP83Q9Y592 693 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 GOLIM4O00461 696 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 UBE2HP62256 183 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 LIMCH1Q9UPQ0 1083 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 KIAA0753Q2KHM9 967 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 FSIP1Q8NA03 581 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 MX1P20591 662 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 AMPD3Q01432 767 aa15.97■□□□□ 0.15
CSPG4-201ENST00000308508 NOP2P46087 812 aaKnown RBP15.97■□□□□ 0.15
CSPG4-201ENST00000308508 HYPKQ9NX55 129 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 COMMD10Q9Y6G5 202 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 PIBF1Q8WXW3 757 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 TTC14Q96N46 770 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 TUBB4AP04350 444 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 MXRA7P84157 204 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 NUTM2GQ5VZR2 741 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 SRRTQ9BXP5 876 aaKnown RBP15.96■□□□□ 0.15
CSPG4-201ENST00000308508 UBA5Q9GZZ9 404 aa15.96■□□□□ 0.15
CSPG4-201ENST00000308508 ZNF165P49910 485 aa15.96■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC121Q6ZUS5 278 aa15.96■□□□□ 0.14
CSPG4-201ENST00000308508 RBM42Q9BTD8 480 aaKnown RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 NOL3O60936 208 aaKnown RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 KLHL34Q8N239 644 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 JPH4Q96JJ6 628 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 RASAL2Q9UJF2 1139 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 RBM5P52756 815 aaKnown RBP eCLIP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 PRPF40BQ6NWY9 871 aaKnown RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 SSFA2P28290 1259 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 MICALL1Q8N3F8 863 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 A0A087WZG4 1122 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 TATP17735 454 aaPredicted RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 FERMT2Q96AC1 680 aa15.95■□□□□ 0.14
CSPG4-201ENST00000308508 IQCGQ9H095 443 aaKnown RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 CPSF2Q9P2I0 782 aaKnown RBP15.95■□□□□ 0.14
CSPG4-201ENST00000308508 ACTN2P35609 894 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 EBAG9O00559 213 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC172P0C7W6 258 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 PUS7Q96PZ0 661 aaKnown RBP15.94■□□□□ 0.14
CSPG4-201ENST00000308508 IL1RAPL2Q9NP60 686 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 ANKRD50Q9ULJ7 1429 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 ATP2C2O75185 946 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 LIG1P18858 919 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 CLCN1P35523 988 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 CABP4P57796 275 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 SSRP1Q08945 709 aaKnown RBP15.94■□□□□ 0.14
CSPG4-201ENST00000308508 RSRC1Q96IZ7 334 aaKnown RBP15.94■□□□□ 0.14
CSPG4-201ENST00000308508 AKAP2Q9Y2D5 859 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 ZWINTO95229 277 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 SMC6Q96SB8 1091 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 SELENOOQ9BVL4 669 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 SERPINA10Q9UK55 444 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 MYL6BP14649 208 aa15.94■□□□□ 0.14
CSPG4-201ENST00000308508 IDH1O75874 414 aaKnown RBP15.93■□□□□ 0.14
CSPG4-201ENST00000308508 ANKRD30BQ9BXX2 1392 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CLGNO14967 610 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CAPN2P17655 700 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CEP57Q86XR8 500 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 OTUD6BQ8N6M0 293 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 KLHL40Q2TBA0 621 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE15A4D2H0 777 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE8P0CG41 777 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 PIP4K2BP78356 416 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE6Q86UF2 777 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE4Q8IX94 777 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE1Q96RT6 745 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 SULT6B1Q6IMI4 303 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 CTCFLQ8NI51 663 aaPredicted RBP15.93■□□□□ 0.14
CSPG4-201ENST00000308508 MCM6Q14566 821 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 SLC12A7Q9Y666 1083 aa15.93■□□□□ 0.14
CSPG4-201ENST00000308508 TMEM57Q8N5G2 664 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 ATRIPQ8WXE1 791 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 NKTRP30414 1462 aaKnown RBP15.92■□□□□ 0.14
CSPG4-201ENST00000308508 KIF5BP33176 963 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 TBC1D2Q9BYX2 928 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 DHX29Q7Z478 1369 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms