RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 KDM6AO15550 1401 aaPredicted RBP29.46■■■□□ 2.31
TRIM54-201ENST00000296098 NBPF7P0C2Y1 421 aaPredicted RBP29.45■■■□□ 2.31
TRIM54-201ENST00000296098 TATP17735 454 aaPredicted RBP29.45■■■□□ 2.31
TRIM54-201ENST00000296098 TSHZ3Q63HK5 1081 aa29.45■■■□□ 2.31
TRIM54-201ENST00000296098 STAP2Q9UGK3 403 aa29.45■■■□□ 2.31
TRIM54-201ENST00000296098 RAB11FIP3O75154 756 aa29.45■■■□□ 2.3
TRIM54-201ENST00000296098 DNAJC5Q9H3Z4 198 aa29.45■■■□□ 2.3
TRIM54-201ENST00000296098 AOX1Q06278 1338 aa29.45■■■□□ 2.3
TRIM54-201ENST00000296098 PLEKHG2Q9H7P9 1386 aa29.44■■■□□ 2.3
TRIM54-201ENST00000296098 MCM4P33991 863 aa29.44■■■□□ 2.3
TRIM54-201ENST00000296098 PROSER3Q2NL68 480 aa29.44■■■□□ 2.3
TRIM54-201ENST00000296098 SPG7Q9UQ90 795 aa29.44■■■□□ 2.3
TRIM54-201ENST00000296098 HSP90AA1P07900 732 aaKnown RBP29.43■■■□□ 2.3
TRIM54-201ENST00000296098 XIRP1Q702N8 1843 aaKnown RBP29.43■■■□□ 2.3
TRIM54-201ENST00000296098 C5P01031 1676 aa29.43■■■□□ 2.3
TRIM54-201ENST00000296098 SRGAP3O43295 1099 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 HYPKQ9NX55 129 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 PKD1L3Q7Z443 1732 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 PRAMEF22A3QJZ6 481 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 CSB-PGBD3P0DP91 1061 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 CABLES1Q8TDN4 633 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.42■■■□□ 2.3
TRIM54-201ENST00000296098 MAP3K2Q9Y2U5 619 aa29.42■■■□□ 2.3
TRIM54-201ENST00000296098 SURF6O75683 361 aaKnown RBP29.41■■■□□ 2.3
TRIM54-201ENST00000296098 ALDH1L1O75891 902 aa29.41■■■□□ 2.3
TRIM54-201ENST00000296098 PHKG2P15735 406 aa29.41■■■□□ 2.3
TRIM54-201ENST00000296098 KSR2Q6VAB6 950 aa29.41■■■□□ 2.3
TRIM54-201ENST00000296098 SLC52A2Q9HAB3 445 aa29.41■■■□□ 2.3
TRIM54-201ENST00000296098 SPATA31A3Q5VYP0 1347 aa29.41■■■□□ 2.3
TRIM54-201ENST00000296098 HSPA2P54652 639 aa29.39■■■□□ 2.3
TRIM54-201ENST00000296098 IL1RAPL2Q9NP60 686 aa29.39■■■□□ 2.3
TRIM54-201ENST00000296098 MRC1P22897 1456 aa29.39■■■□□ 2.3
TRIM54-201ENST00000296098 CPDO75976 1380 aa29.38■■■□□ 2.29
TRIM54-201ENST00000296098 ZNF790Q6PG37 636 aa29.38■■■□□ 2.29
TRIM54-201ENST00000296098 CHRNA2Q15822 529 aa29.37■■■□□ 2.29
TRIM54-201ENST00000296098 RHPN1Q8TCX5 695 aa29.37■■■□□ 2.29
TRIM54-201ENST00000296098 KIF1BPQ96EK5 621 aa29.37■■■□□ 2.29
TRIM54-201ENST00000296098 DDX21Q9NR30 783 aaKnown RBP eCLIP29.37■■■□□ 2.29
TRIM54-201ENST00000296098 IFNL2Q8IZJ0 200 aa29.37■■■□□ 2.29
TRIM54-201ENST00000296098 TRIM6-TRIM34B2RNG4 842 aa29.36■■■□□ 2.29
TRIM54-201ENST00000296098 HSP90AB4PQ58FF6 505 aa29.36■■■□□ 2.29
TRIM54-201ENST00000296098 ESYT1Q9BSJ8 1104 aa29.36■■■□□ 2.29
TRIM54-201ENST00000296098 DDX58O95786 925 aaKnown RBP29.35■■■□□ 2.29
TRIM54-201ENST00000296098 MTX1Q13505 466 aa29.35■■■□□ 2.29
TRIM54-201ENST00000296098 RILPL2Q969X0 211 aa29.35■■■□□ 2.29
TRIM54-201ENST00000296098 C9orf78Q9NZ63 289 aaPredicted RBP29.35■■■□□ 2.29
TRIM54-201ENST00000296098 SLC39A6Q13433 755 aa29.34■■■□□ 2.29
TRIM54-201ENST00000296098 FOXD4L1Q9NU39 408 aa29.34■■■□□ 2.29
TRIM54-201ENST00000296098 HDAC5Q9UQL6 1122 aa29.34■■■□□ 2.29
TRIM54-201ENST00000296098 RAB3GAP1Q15042 981 aa29.33■■■□□ 2.29
TRIM54-201ENST00000296098 NUTM1Q86Y26 1132 aa29.33■■■□□ 2.29
TRIM54-201ENST00000296098 AK9Q5TCS8 1911 aa29.33■■■□□ 2.29
TRIM54-201ENST00000296098 DDX11L8A8MPP1 907 aa29.33■■■□□ 2.29
TRIM54-201ENST00000296098 CHMLP26374 656 aa29.33■■■□□ 2.29
TRIM54-201ENST00000296098 PARP4Q9UKK3 1724 aaKnown RBP29.32■■■□□ 2.28
TRIM54-201ENST00000296098 ST18O60284 1047 aa29.32■■■□□ 2.28
TRIM54-201ENST00000296098 PDIA6Q15084 440 aa29.32■■■□□ 2.28
TRIM54-201ENST00000296098 NFATC2IPQ8NCF5 419 aa29.32■■■□□ 2.28
TRIM54-201ENST00000296098 LINS1Q8NG48 757 aa29.32■■■□□ 2.28
TRIM54-201ENST00000296098 CWF19L2Q2TBE0 894 aaKnown RBP29.31■■■□□ 2.28
TRIM54-201ENST00000296098 TNPO1Q92973 898 aaKnown RBP29.31■■■□□ 2.28
TRIM54-201ENST00000296098 DCAF5Q96JK2 942 aa29.31■■■□□ 2.28
TRIM54-201ENST00000296098 BRINP3Q76B58 766 aa29.3■■■□□ 2.28
TRIM54-201ENST00000296098 UNC5CLQ8IV45 518 aa29.29■■■□□ 2.28
TRIM54-201ENST00000296098 CYP27B1O15528 508 aa29.28■■■□□ 2.28
TRIM54-201ENST00000296098 AIMP1Q12904 312 aaKnown RBP29.28■■■□□ 2.28
TRIM54-201ENST00000296098 OS9Q13438 667 aaPredicted RBP29.28■■■□□ 2.28
TRIM54-201ENST00000296098 PI4K2BQ8TCG2 481 aa29.28■■■□□ 2.28
TRIM54-201ENST00000296098 GBP4Q96PP9 640 aa29.28■■■□□ 2.28
TRIM54-201ENST00000296098 UTYO14607 1347 aa29.27■■■□□ 2.28
TRIM54-201ENST00000296098 GRM8O00222 908 aa29.27■■■□□ 2.28
TRIM54-201ENST00000296098 MCCP23508 829 aa29.27■■■□□ 2.28
TRIM54-201ENST00000296098 TTC5Q8N0Z6 440 aa29.26■■■□□ 2.27
TRIM54-201ENST00000296098 ZNF496Q96IT1 587 aaPredicted RBP29.26■■■□□ 2.27
TRIM54-201ENST00000296098 STRCQ7RTU9 1775 aa29.26■■■□□ 2.27
TRIM54-201ENST00000296098 ANO2Q9NQ90 1003 aa29.25■■■□□ 2.27
TRIM54-201ENST00000296098 USP42Q9H9J4 1324 aaKnown RBP29.25■■■□□ 2.27
TRIM54-201ENST00000296098 RIC3Q7Z5B4 369 aa29.24■■■□□ 2.27
TRIM54-201ENST00000296098 LAMB4A4D0S4 1761 aa29.24■■■□□ 2.27
TRIM54-201ENST00000296098 TRAK2O60296 914 aa29.23■■■□□ 2.27
TRIM54-201ENST00000296098 LARP1Q6PKG0 1096 aaKnown RBP29.23■■■□□ 2.27
TRIM54-201ENST00000296098 MYL6BP14649 208 aa29.23■■■□□ 2.27
TRIM54-201ENST00000296098 ERC1Q8IUD2 1116 aa29.23■■■□□ 2.27
TRIM54-201ENST00000296098 SUCLG2Q96I99 432 aa29.23■■■□□ 2.27
TRIM54-201ENST00000296098 SNRPA1P09661 255 aaKnown RBP29.22■■■□□ 2.27
TRIM54-201ENST00000296098 TTC41PQ6P2S7 1318 aa29.22■■■□□ 2.27
TRIM54-201ENST00000296098 GLI3P10071 1580 aa29.22■■■□□ 2.27
TRIM54-201ENST00000296098 XAGE3Q8WTP9 111 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 FMNL2Q96PY5 1086 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 ANAPC15P60006 121 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 NEXNQ0ZGT2 675 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 CNTROBQ8N137 903 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 ABCA3Q99758 1704 aa29.21■■■□□ 2.27
TRIM54-201ENST00000296098 EPB41L2O43491 1005 aaKnown RBP29.2■■■□□ 2.27
TRIM54-201ENST00000296098 IGKV5-2P06315 115 aa29.2■■■□□ 2.27
TRIM54-201ENST00000296098 CLASRPQ8N2M8 674 aaKnown RBP29.2■■■□□ 2.27
TRIM54-201ENST00000296098 WDR17Q8IZU2 1322 aa29.2■■■□□ 2.26
TRIM54-201ENST00000296098 CABP4P57796 275 aa29.2■■■□□ 2.26
TRIM54-201ENST00000296098 PRDM11Q9NQV5 511 aa29.2■■■□□ 2.26
TRIM54-201ENST00000296098 MAP4K4O95819 1239 aaPredicted RBP29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms