RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 NOB1Q9ULX3 412 aaKnown RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC12Q8WUD4 166 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC171Q6TFL3 1326 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 SYNCQ9H7C4 482 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 PRPHP41219 470 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 NLRP6P59044 892 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CEP135Q66GS9 1140 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 TBC1D5Q92609 795 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC88BA6NC98 1476 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 MAP4K4O95819 1239 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 PRKCSHP14314 528 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CABP4P57796 275 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CFAP58Q5T655 872 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 ABTB2Q8N961 1025 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 CTCFLQ8NI51 663 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 SETSIPP0DME0 302 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 PSMC4P43686 418 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 STRN4Q9NRL3 753 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 KIF21BO75037 1637 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 GTF2A1P52655 376 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 TPD52P55327 224 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 KIAA0753Q2KHM9 967 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 PRDM10Q9NQV6 1147 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 MTIF2P46199 727 aaKnown RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC40Q4G0X9 1142 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC77Q9BR77 488 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 HYPKQ9NX55 129 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CBX1P83916 185 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CWC27Q6UX04 472 aaKnown RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 C16orf45Q96MC5 204 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 MPHOSPH6Q99547 160 aaKnown RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 JADE2Q9NQC1 790 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC194A0A1B0GVG4 234 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CRACR2BQ8N4Y2 399 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-201ENST00000282516 MCM4P33991 863 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 MAP3K9P80192 1104 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 AMPD3Q01432 767 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 NUTM2GQ5VZR2 741 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CEP126Q9P2H0 1117 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 ODF2LQ9ULJ1 636 aa10.04□□□□□ -0.8
NIPBL-201ENST00000282516 CHD1LQ86WJ1 897 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 KIAA1524Q8TCG1 905 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 SPG7Q9UQ90 795 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 GMNNO75496 209 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 PRKAR2BP31323 418 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC110Q8TBZ0 833 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 C8orf76Q96K31 380 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 DYNC1I1O14576 645 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC96Q2M329 555 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 ATP2A1O14983 1001 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 ARHGAP5Q13017 1502 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 SLC4A2P04920 1241 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC121Q6ZUS5 278 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 OTUD6BQ8N6M0 293 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 RGS22Q8NE09 1264 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 HMGB1P09429 215 aaKnown RBP10.03□□□□□ -0.8
NIPBL-201ENST00000282516 ZBTB16Q05516 673 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 SNW1Q13573 536 aaKnown RBP10.03□□□□□ -0.8
NIPBL-201ENST00000282516 USP37Q86T82 979 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 TCP11L2Q8N4U5 519 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 SWAP70Q9UH65 585 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 SLF2Q8IX21 1173 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 IL27Q8NEV9 243 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 NOP2P46087 812 aaKnown RBP10.03□□□□□ -0.8
NIPBL-201ENST00000282516 CALML4Q96GE6 196 aa10.03□□□□□ -0.8
NIPBL-201ENST00000282516 ZFYP08048 801 aaPredicted RBP10.02□□□□□ -0.8
NIPBL-201ENST00000282516 ALDH3A1P30838 453 aa10.02□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC14Q49A88 953 aa10.02□□□□□ -0.8
NIPBL-201ENST00000282516 MIPOL1Q8TD10 442 aa10.02□□□□□ -0.8
NIPBL-201ENST00000282516 BAG4O95429 457 aaKnown RBP10.02□□□□□ -0.8
NIPBL-201ENST00000282516 CHMP4BP1P59074 171 aa10.02□□□□□ -0.8
NIPBL-201ENST00000282516 KRT222Q8N1A0 295 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 LRRC27Q9C0I9 530 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 STIM2Q9P246 746 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 PUF60Q9UHX1 559 aaKnown RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 ZNF530Q6P9A1 599 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 FAM184BQ9ULE4 1060 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 ERMNQ8TAM6 284 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 PAXBP1Q9Y5B6 917 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 SRGAP3O43295 1099 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 POLR3DP05423 398 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 SPTY2D1Q68D10 685 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 SMC1BQ8NDV3 1235 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 AKAP2Q9Y2D5 859 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 SYCP3Q8IZU3 236 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 RNF41Q9H4P4 317 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 PLEKHH2Q8IVE3 1493 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 NDC80O14777 642 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 OPA1O60313 960 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 IDH1O75874 414 aaKnown RBP10.02□□□□□ -0.81
NIPBL-201ENST00000282516 KIF5BP33176 963 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 PPP4R3BQ5MIZ7 849 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 SLC12A7Q9Y666 1083 aa10.02□□□□□ -0.81
NIPBL-201ENST00000282516 TACC1O75410 805 aa10.01□□□□□ -0.81
NIPBL-201ENST00000282516 CPSF2Q9P2I0 782 aaKnown RBP10.01□□□□□ -0.81
NIPBL-201ENST00000282516 CABP2Q9NPB3 220 aa10.01□□□□□ -0.81
NIPBL-201ENST00000282516 FAM114A2Q9NRY5 505 aa10.01□□□□□ -0.81
NIPBL-201ENST00000282516 CCDC174Q6PII3 467 aa10.01□□□□□ -0.81
NIPBL-201ENST00000282516 DDX19AQ9NUU7 478 aaKnown RBP10.01□□□□□ -0.81
NIPBL-201ENST00000282516 PAIP2Q9BPZ3 127 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms