RNA–Protein interactions for RNA: ENST00000265810.8

PDLIM2-201, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 4,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-201ENST00000265810 CPSF1Q10570 1443 aaKnown RBP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 CDCA7Q9BWT1 371 aaPredicted RBP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 RTL1A6NKG5 1358 aa17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 EIF4A1P60842 406 aaKnown RBP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 FKBP4Q02790 459 aaKnown RBP eCLIP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 IFIT5Q13325 482 aaKnown RBP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 NOL10Q9BSC4 688 aaKnown RBP17.52■□□□□ 0.4
PDLIM2-201ENST00000265810 LINS1Q8NG48 757 aa17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 CCDC8Q9H0W5 538 aaPredicted RBP17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 TBC1D2BQ9UPU7 963 aa17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 SOS1Q07889 1333 aaPredicted RBP17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 ANKRD44Q8N8A2 993 aa17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 KIAA1210Q9ULL0 1709 aa17.52■□□□□ 0.39
PDLIM2-201ENST00000265810 GRM8O00222 908 aa17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 ALDH1L1O75891 902 aa17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 METTL24Q5JXM2 366 aa17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 SMARCC1Q92922 1105 aaPredicted RBP17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 KIF24Q5T7B8 1368 aa17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 TRMT2AQ8IZ69 625 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 IGHMBP2P38935 993 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 PRIM1P49642 420 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-201ENST00000265810 AXIN2Q9Y2T1 843 aa17.5■□□□□ 0.39
PDLIM2-201ENST00000265810 HIP1O00291 1037 aa17.5■□□□□ 0.39
PDLIM2-201ENST00000265810 HOXB7P09629 217 aa17.5■□□□□ 0.39
PDLIM2-201ENST00000265810 SETD1BQ9UPS6 1966 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-201ENST00000265810 ZBTB7BO15156 539 aaPredicted RBP17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 PHF14O94880 888 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 TRDNQ13061 729 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 USP19O94966 1318 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 AK7Q96M32 723 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 BOLA2Q9H3K6 86 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 USP21Q9UK80 565 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 RNF123Q5XPI4 1314 aa17.49■□□□□ 0.39
PDLIM2-201ENST00000265810 GLRX3O76003 335 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 CWC27Q6UX04 472 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 IQGAP1P46940 1657 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 NEURL4Q96JN8 1562 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 GZF1Q9H116 711 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 PPLO60437 1756 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 REREQ9P2R6 1566 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 A1BGP04217 495 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 CARD10Q9BWT7 1032 aa17.48■□□□□ 0.39
PDLIM2-201ENST00000265810 WDR17Q8IZU2 1322 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 ATP8B2P98198 1209 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 TECPR2O15040 1411 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 NEK4P51957 841 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 TSHZ3Q63HK5 1081 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 C1orf167Q5SNV9 1468 aa17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 FOXD4L6Q3SYB3 417 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 FOXD4L3Q6VB84 417 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 GNL3LQ9NVN8 582 aaKnown RBP17.47■□□□□ 0.39
PDLIM2-201ENST00000265810 FER1L4A9Z1Z3 1794 aa17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 NUCB1Q02818 461 aa17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 CEP85Q6P2H3 762 aa17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 ANKRD18BA2A2Z9 1011 aa17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 LMBR1LQ6UX01 489 aa17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 DZIP3Q86Y13 1208 aaKnown RBP17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.46■□□□□ 0.39
PDLIM2-201ENST00000265810 GIGYF1O75420 1035 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 PPP1R1BQ9UD71 204 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 RHPN1Q8TCX5 695 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 USP31Q70CQ4 1352 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 CDC42BPGQ6DT37 1551 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 RFC4P35249 363 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 LDHAL6AQ6ZMR3 332 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 FAM184AQ8NB25 1140 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 ERVV-2B6SEH9 535 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 HMGB2P26583 209 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 AKAP2Q9Y2D5 859 aa17.45■□□□□ 0.38
PDLIM2-201ENST00000265810 DNAJC10Q8IXB1 793 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 AMOTL1Q8IY63 956 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 KIF3AQ9Y496 699 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 RALYLQ86SE5 291 aaKnown RBP17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 USP16Q9Y5T5 823 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 PNPLA6Q8IY17 1366 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 KDM4FA0A1W2PPD8 638 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 PLCB2Q00722 1185 aa17.44■□□□□ 0.38
PDLIM2-201ENST00000265810 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.43■□□□□ 0.38
PDLIM2-201ENST00000265810 PA2G4Q9UQ80 394 aaKnown RBP17.43■□□□□ 0.38
PDLIM2-201ENST00000265810 SYNE3Q6ZMZ3 975 aa17.43■□□□□ 0.38
PDLIM2-201ENST00000265810 MED14O60244 1454 aa17.43■□□□□ 0.38
PDLIM2-201ENST00000265810 C16orf71Q8IYS4 520 aaPredicted RBP17.43■□□□□ 0.38
PDLIM2-201ENST00000265810 DCTPP1Q9H773 170 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 H3BQV1 296 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 ZNF853P0CG23 659 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 IFFO2Q5TF58 517 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 NIP7Q9Y221 180 aaKnown RBP eCLIP17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 RABEP1Q15276 862 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 ECHDC1Q9NTX5 307 aa17.42■□□□□ 0.38
PDLIM2-201ENST00000265810 CPS1P31327 1500 aa17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 BCL11BQ9C0K0 894 aaPredicted RBP17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 IDH1O75874 414 aaKnown RBP17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 IFIT1P09914 478 aaKnown RBP17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 PSMA5P28066 241 aa17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 BMP2KLQ5H9B9 411 aa17.41■□□□□ 0.38
PDLIM2-201ENST00000265810 SMC5Q8IY18 1101 aa17.4■□□□□ 0.38
PDLIM2-201ENST00000265810 CPLX1O14810 134 aa17.4■□□□□ 0.38
PDLIM2-201ENST00000265810 CHMP5Q9NZZ3 219 aa17.4■□□□□ 0.38
PDLIM2-201ENST00000265810 DIP2AQ14689 1571 aa17.4■□□□□ 0.38
PDLIM2-201ENST00000265810 CPLX2Q6PUV4 134 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms