RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 COPS6Q7L5N1 327 aa20.67■□□□□ 0.9
USP4-201ENST00000265560 SRCIN1Q9C0H9 1055 aa20.67■□□□□ 0.9
USP4-201ENST00000265560 TMOD3Q9NYL9 352 aa20.67■□□□□ 0.9
USP4-201ENST00000265560 COL14A1Q05707 1796 aaKnown RBP20.67■□□□□ 0.9
USP4-201ENST00000265560 XAGE3Q8WTP9 111 aa20.67■□□□□ 0.9
USP4-201ENST00000265560 PIGBQ92521 554 aa20.66■□□□□ 0.9
USP4-201ENST00000265560 DDX21Q9NR30 783 aaKnown RBP eCLIP20.66■□□□□ 0.9
USP4-201ENST00000265560 C5P01031 1676 aa20.66■□□□□ 0.9
USP4-201ENST00000265560 A1BGP04217 495 aa20.66■□□□□ 0.9
USP4-201ENST00000265560 ANKRD44Q8N8A2 993 aa20.66■□□□□ 0.9
USP4-201ENST00000265560 JARID2Q92833 1246 aaPredicted RBP20.66■□□□□ 0.9
USP4-201ENST00000265560 ACSBG1Q96GR2 724 aa20.66■□□□□ 0.9
USP4-201ENST00000265560 ATP10DQ9P241 1426 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 ERVV-2B6SEH9 535 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 NKX1-1Q15270 411 aaPredicted RBP20.65■□□□□ 0.9
USP4-201ENST00000265560 CHD1LQ86WJ1 897 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 C16orf71Q8IYS4 520 aaPredicted RBP20.65■□□□□ 0.9
USP4-201ENST00000265560 PNMA6EA0A0J9YXQ4 647 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 GNAI2P04899 355 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 NUCB1Q02818 461 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 CERKQ8TCT0 537 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 SHANK3Q9BYB0 1731 aa20.65■□□□□ 0.9
USP4-201ENST00000265560 FAM161AQ3B820 660 aa20.64■□□□□ 0.9
USP4-201ENST00000265560 BEND3Q5T5X7 828 aa20.64■□□□□ 0.9
USP4-201ENST00000265560 RBM42Q9BTD8 480 aaKnown RBP20.64■□□□□ 0.9
USP4-201ENST00000265560 EP400Q96L91 3159 aa20.64■□□□□ 0.9
USP4-201ENST00000265560 MYT1Q01538 1121 aa20.64■□□□□ 0.89
USP4-201ENST00000265560 COL22A1Q8NFW1 1626 aaPredicted RBP20.64■□□□□ 0.89
USP4-201ENST00000265560 SEC24BO95487 1268 aa20.64■□□□□ 0.89
USP4-201ENST00000265560 RIC3Q7Z5B4 369 aa20.64■□□□□ 0.89
USP4-201ENST00000265560 HYPKQ9NX55 129 aa20.64■□□□□ 0.89
USP4-201ENST00000265560 UBTFL1P0CB47 393 aaPredicted RBP20.63■□□□□ 0.89
USP4-201ENST00000265560 EXOC6BQ9Y2D4 811 aa20.63■□□□□ 0.89
USP4-201ENST00000265560 SPATA31A1Q5TZJ5 1347 aa20.63■□□□□ 0.89
USP4-201ENST00000265560 FAM98CQ17RN3 349 aaKnown RBP20.63■□□□□ 0.89
USP4-201ENST00000265560 PRIM1P49642 420 aaKnown RBP20.62■□□□□ 0.89
USP4-201ENST00000265560 KSR2Q6VAB6 950 aa20.62■□□□□ 0.89
USP4-201ENST00000265560 ARXQ96QS3 562 aa20.62■□□□□ 0.89
USP4-201ENST00000265560 OTUD7AQ8TE49 926 aaPredicted RBP20.62■□□□□ 0.89
USP4-201ENST00000265560 NBPF26B4DH59 902 aa20.61■□□□□ 0.89
USP4-201ENST00000265560 DDB1Q16531 1140 aa20.61■□□□□ 0.89
USP4-201ENST00000265560 NBPF14Q5TI25 921 aa20.61■□□□□ 0.89
USP4-201ENST00000265560 NBPF10Q6P3W6 841 aaKnown RBP20.61■□□□□ 0.89
USP4-201ENST00000265560 RPAP2Q8IXW5 612 aaPredicted RBP20.61■□□□□ 0.89
USP4-201ENST00000265560 NBPF15Q8N660 670 aa20.61■□□□□ 0.89
USP4-201ENST00000265560 PLCH1Q4KWH8 1693 aa20.61■□□□□ 0.89
USP4-201ENST00000265560 GNAI3P08754 354 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 HSPA1LP34931 641 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 GCC1Q96CN9 775 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 MRC1P22897 1456 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 DCTPP1Q9H773 170 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 ATP5J2-PTCD1G3V325 749 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 FAM182BQ5T319 152 aa20.6■□□□□ 0.89
USP4-201ENST00000265560 C9orf78Q9NZ63 289 aaPredicted RBP20.6■□□□□ 0.89
USP4-201ENST00000265560 RTL5Q5HYW3 569 aaPredicted RBP20.59■□□□□ 0.89
USP4-201ENST00000265560 MYD88Q99836 296 aa20.59■□□□□ 0.89
USP4-201ENST00000265560 CHMP4AQ9BY43 222 aa20.59■□□□□ 0.89
USP4-201ENST00000265560 ATG3Q9NT62 314 aa20.59■□□□□ 0.89
USP4-201ENST00000265560 DISP2A7MBM2 1401 aa20.59■□□□□ 0.89
USP4-201ENST00000265560 TOGARAM1Q9Y4F4 1720 aa20.58■□□□□ 0.89
USP4-201ENST00000265560 TTLL7Q6ZT98 887 aa20.58■□□□□ 0.88
USP4-201ENST00000265560 DNAJC10Q8IXB1 793 aa20.58■□□□□ 0.88
USP4-201ENST00000265560 ANKRD13DQ6ZTN6 518 aa20.58■□□□□ 0.88
USP4-201ENST00000265560 SPATA31A5Q5VU36 1347 aa20.57■□□□□ 0.88
USP4-201ENST00000265560 SPATA31A7Q8IWB4 1347 aa20.57■□□□□ 0.88
USP4-201ENST00000265560 LRP10Q7Z4F1 713 aa20.57■□□□□ 0.88
USP4-201ENST00000265560 MARCH10Q8NA82 808 aaPredicted RBP20.57■□□□□ 0.88
USP4-201ENST00000265560 DDX58O95786 925 aaKnown RBP20.56■□□□□ 0.88
USP4-201ENST00000265560 IGKV5-2P06315 115 aa20.56■□□□□ 0.88
USP4-201ENST00000265560 PPP1R42Q7Z4L9 355 aa20.56■□□□□ 0.88
USP4-201ENST00000265560 UNC5CLQ8IV45 518 aa20.56■□□□□ 0.88
USP4-201ENST00000265560 ZBTB3Q9H5J0 574 aa20.56■□□□□ 0.88
USP4-201ENST00000265560 MSH5O43196 834 aa20.56■□□□□ 0.88
USP4-201ENST00000265560 JCADQ9P266 1359 aa20.55■□□□□ 0.88
USP4-201ENST00000265560 TSHZ3Q63HK5 1081 aa20.55■□□□□ 0.88
USP4-201ENST00000265560 ZBTB47Q9UFB7 747 aaPredicted RBP20.55■□□□□ 0.88
USP4-201ENST00000265560 KCNQ2O43526 872 aa20.54■□□□□ 0.88
USP4-201ENST00000265560 SLC4A9Q96Q91 983 aa20.54■□□□□ 0.88
USP4-201ENST00000265560 SRGAP3O43295 1099 aa20.54■□□□□ 0.88
USP4-201ENST00000265560 HMMRO75330 724 aa20.54■□□□□ 0.88
USP4-201ENST00000265560 ATP8B2P98198 1209 aa20.54■□□□□ 0.88
USP4-201ENST00000265560 MEX3CQ5U5Q3 659 aaKnown RBP20.53■□□□□ 0.88
USP4-201ENST00000265560 PLEKHG2Q9H7P9 1386 aa20.53■□□□□ 0.88
USP4-201ENST00000265560 ANP32AP39687 249 aaKnown RBP20.53■□□□□ 0.88
USP4-201ENST00000265560 USP21Q9UK80 565 aa20.53■□□□□ 0.88
USP4-201ENST00000265560 ITGB4P16144 1822 aa20.52■□□□□ 0.88
USP4-201ENST00000265560 LINS1Q8NG48 757 aa20.52■□□□□ 0.88
USP4-201ENST00000265560 IL1RAPL2Q9NP60 686 aa20.52■□□□□ 0.88
USP4-201ENST00000265560 SLIT2O94813 1529 aa20.52■□□□□ 0.88
USP4-201ENST00000265560 KCPQ6ZWJ8 1503 aa20.52■□□□□ 0.88
USP4-201ENST00000265560 KCNQ4P56696 695 aa20.51■□□□□ 0.87
USP4-201ENST00000265560 PTF1AQ7RTS3 328 aa20.51■□□□□ 0.87
USP4-201ENST00000265560 NEXNQ0ZGT2 675 aa20.51■□□□□ 0.87
USP4-201ENST00000265560 BCL9LQ86UU0 1499 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 GLI3P10071 1580 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 NRAPQ86VF7 1730 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 SURF6O75683 361 aaKnown RBP20.5■□□□□ 0.87
USP4-201ENST00000265560 PA2G4Q9UQ80 394 aaKnown RBP20.5■□□□□ 0.87
USP4-201ENST00000265560 LRP6O75581 1613 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 NEURL1BA8MQ27 555 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms