RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 TSHZ3Q63HK5 1081 aa16.47■□□□□ 0.23
CDH3-201ENST00000264012 MAGEC2Q9UBF1 373 aaPredicted RBP16.47■□□□□ 0.23
CDH3-201ENST00000264012 TNNT3P45378 269 aaPredicted RBP16.47■□□□□ 0.23
CDH3-201ENST00000264012 NUCB1Q02818 461 aa16.47■□□□□ 0.23
CDH3-201ENST00000264012 CCAR1Q8IX12 1150 aaKnown RBP16.47■□□□□ 0.23
CDH3-201ENST00000264012 MPNDQ8N594 471 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 WASF1Q92558 559 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 ARGLU1Q9NWB6 273 aaPredicted RBP16.46■□□□□ 0.23
CDH3-201ENST00000264012 CWC25Q9NXE8 425 aaPredicted RBP16.46■□□□□ 0.23
CDH3-201ENST00000264012 CHPF2Q9P2E5 772 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 KRT18P05783 430 aaKnown RBP16.46■□□□□ 0.23
CDH3-201ENST00000264012 MRPL50Q8N5N7 158 aaKnown RBP16.46■□□□□ 0.23
CDH3-201ENST00000264012 BCL11BQ9C0K0 894 aaPredicted RBP16.46■□□□□ 0.23
CDH3-201ENST00000264012 NAPBQ9H115 298 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 A0A1W2PP64 1363 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 NPATQ14207 1427 aa16.46■□□□□ 0.23
CDH3-201ENST00000264012 MAP3K12Q12852 859 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 LIMCH1Q9UPQ0 1083 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 ANKRD13DQ6ZTN6 518 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 PLEKHH1Q9ULM0 1364 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 TTLL5Q6EMB2 1281 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 SMARCE1Q969G3 411 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 TBC1D32Q96NH3 1257 aa16.45■□□□□ 0.22
CDH3-201ENST00000264012 MINDY4BA8MYZ0 360 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 ZSCAN29Q8IWY8 852 aaPredicted RBP16.44■□□□□ 0.22
CDH3-201ENST00000264012 CEP57L1Q8IYX8 460 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 DACH1Q9UI36 760 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 FLT4P35916 1363 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 HMGB1P09429 215 aaKnown RBP16.44■□□□□ 0.22
CDH3-201ENST00000264012 SLC5A1P13866 664 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 MTHFSDQ2M296 383 aaKnown RBP16.44■□□□□ 0.22
CDH3-201ENST00000264012 RHPN1Q8TCX5 695 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 NGLY1Q96IV0 654 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 NPHP3Q7Z494 1330 aa16.44■□□□□ 0.22
CDH3-201ENST00000264012 ADGRL2O95490 1459 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 MSH6P52701 1360 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 SYCE3A1L190 88 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 LDHAL6AQ6ZMR3 332 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 ANKRD44Q8N8A2 993 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 SSFA2P28290 1259 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 PIBF1Q8WXW3 757 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 CT47A1Q5JQC4 288 aaPredicted RBP16.43■□□□□ 0.22
CDH3-201ENST00000264012 PHACTR3Q96KR7 559 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 GOLIM4O00461 696 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 AKAP4Q5JQC9 854 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 JARID2Q92833 1246 aaPredicted RBP16.43■□□□□ 0.22
CDH3-201ENST00000264012 ABCC1P33527 1531 aa16.43■□□□□ 0.22
CDH3-201ENST00000264012 YTHDC2Q9H6S0 1430 aaKnown RBP16.43■□□□□ 0.22
CDH3-201ENST00000264012 ZMYM3Q14202 1370 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 COL17A1Q9UMD9 1497 aaPredicted RBP16.42■□□□□ 0.22
CDH3-201ENST00000264012 UHRF1BP1Q6BDS2 1440 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 HMGB2P26583 209 aaKnown RBP16.42■□□□□ 0.22
CDH3-201ENST00000264012 STIM1Q13586 685 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 SLC39A6Q13433 755 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 TNNQ9UQP3 1299 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 NCKAP5LQ9HCH0 1330 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 ZNF213O14771 459 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 XAGE3Q8WTP9 111 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 SCAND2PQ9GZW5 306 aaPredicted RBP16.42■□□□□ 0.22
CDH3-201ENST00000264012 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
CDH3-201ENST00000264012 CCP110O43303 1012 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 VAMP4O75379 141 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 TNPO1Q92973 898 aaKnown RBP16.41■□□□□ 0.22
CDH3-201ENST00000264012 SNRKQ9NRH2 765 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 ZCRB1Q8TBF4 217 aaKnown RBP16.41■□□□□ 0.22
CDH3-201ENST00000264012 RLBP1P12271 317 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 SDSP20132 328 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 COPS6Q7L5N1 327 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 LARP6Q9BRS8 491 aaKnown RBP16.41■□□□□ 0.22
CDH3-201ENST00000264012 ANKIB1Q9P2G1 1089 aa16.41■□□□□ 0.22
CDH3-201ENST00000264012 USP5P45974 858 aa16.4■□□□□ 0.22
CDH3-201ENST00000264012 LRRC59Q96AG4 307 aaKnown RBP16.4■□□□□ 0.22
CDH3-201ENST00000264012 ZFYVE9O95405 1425 aa16.4■□□□□ 0.22
CDH3-201ENST00000264012 DHX8Q14562 1220 aaKnown RBP16.4■□□□□ 0.22
CDH3-201ENST00000264012 HMGN5P82970 282 aaKnown RBP16.4■□□□□ 0.22
CDH3-201ENST00000264012 PRM3Q9NNZ6 103 aa16.4■□□□□ 0.22
CDH3-201ENST00000264012 C8orf76Q96K31 380 aa16.4■□□□□ 0.22
CDH3-201ENST00000264012 EYA1Q99502 592 aa16.4■□□□□ 0.22
CDH3-201ENST00000264012 CCDC196A0A1B0GTZ2 297 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 KCNA6P17658 529 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 PDE1AP54750 535 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 TEX35Q5T0J7 233 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 PPFIBP1Q86W92 1011 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 DZIP1Q86YF9 867 aaKnown RBP16.39■□□□□ 0.21
CDH3-201ENST00000264012 CAGE1Q8TC20 777 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 ZHX3Q9H4I2 956 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 ZNF287Q9HBT7 754 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 ALDH1L1O75891 902 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 CAMK4Q16566 473 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 ABCA5Q8WWZ7 1642 aa16.39■□□□□ 0.21
CDH3-201ENST00000264012 ZNF771Q7L3S4 317 aaPredicted RBP16.39■□□□□ 0.21
CDH3-201ENST00000264012 KRT24Q2M2I5 525 aa16.38■□□□□ 0.21
CDH3-201ENST00000264012 KSR2Q6VAB6 950 aa16.38■□□□□ 0.21
CDH3-201ENST00000264012 MKNK2Q9HBH9 465 aa16.38■□□□□ 0.21
CDH3-201ENST00000264012 ZNHIT6Q9NWK9 470 aaKnown RBP16.38■□□□□ 0.21
CDH3-201ENST00000264012 POLR3DP05423 398 aaPredicted RBP16.38■□□□□ 0.21
CDH3-201ENST00000264012 ATP8B2P98198 1209 aa16.38■□□□□ 0.21
CDH3-201ENST00000264012 GRM8O00222 908 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms