RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FLT4P35916 1363 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 OFD1O75665 1012 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 CASTP20810 708 aaKnown RBP15.24■□□□□ 0.03
LIG1-201ENST00000263274 CNTROBQ8N137 903 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 CHPF2Q9P2E5 772 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 USP25Q9UHP3 1055 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 WDR33Q9C0J8 1336 aaKnown RBP15.24■□□□□ 0.03
LIG1-201ENST00000263274 CCDC83Q8IWF9 413 aa15.24■□□□□ 0.03
LIG1-201ENST00000263274 CCDC9Q9Y3X0 531 aaKnown RBP15.24■□□□□ 0.03
LIG1-201ENST00000263274 CRB1P82279 1406 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 KCNQ3O43525 872 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 MPRIPQ6WCQ1 1025 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 LGR6Q9HBX8 967 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 CCDC39Q9UFE4 941 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 KNDC1Q76NI1 1749 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 CDC42BPGQ6DT37 1551 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 UQCRHLA0A096LP55 91 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 UQCRHP07919 91 aa15.23■□□□□ 0.03
LIG1-201ENST00000263274 PA2G4Q9UQ80 394 aaKnown RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 KDM4FA0A1W2PPD8 638 aa15.22■□□□□ 0.03
LIG1-201ENST00000263274 IFIT2P09913 472 aaKnown RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 PRPF40BQ6NWY9 871 aaKnown RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 JAKMIP1Q96N16 626 aaKnown RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 SIL1Q9H173 461 aa15.22■□□□□ 0.03
LIG1-201ENST00000263274 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 FERMT3Q86UX7 667 aa15.22■□□□□ 0.03
LIG1-201ENST00000263274 DHX37Q8IY37 1157 aaKnown RBP15.22■□□□□ 0.03
LIG1-201ENST00000263274 RASEFQ8IZ41 740 aa15.22■□□□□ 0.03
LIG1-201ENST00000263274 KIF1BPQ96EK5 621 aa15.22■□□□□ 0.03
LIG1-201ENST00000263274 USP6P35125 1406 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 PHF14O94880 888 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 HCLS1P14317 486 aaPredicted RBP15.21■□□□□ 0.03
LIG1-201ENST00000263274 HOXC9P31274 260 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 AK2P54819 239 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 TCEANC2Q96MN5 208 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 NOL7Q9UMY1 257 aaKnown RBP15.21■□□□□ 0.03
LIG1-201ENST00000263274 ZKSCAN5Q9Y2L8 839 aa15.21■□□□□ 0.03
LIG1-201ENST00000263274 CLTCQ00610 1675 aaKnown RBP15.21■□□□□ 0.03
LIG1-201ENST00000263274 SOS1Q07889 1333 aaPredicted RBP15.21■□□□□ 0.03
LIG1-201ENST00000263274 CLASRPQ8N2M8 674 aaKnown RBP15.21■□□□□ 0.03
LIG1-201ENST00000263274 IBTKQ9P2D0 1353 aaPredicted RBP15.21■□□□□ 0.02
LIG1-201ENST00000263274 TMEM2Q9UHN6 1383 aa15.2■□□□□ 0.02
LIG1-201ENST00000263274 ANAPC15P60006 121 aa15.2■□□□□ 0.02
LIG1-201ENST00000263274 KIAA2012Q0VF49 1180 aa15.2■□□□□ 0.02
LIG1-201ENST00000263274 NECAB1Q8N987 351 aa15.2■□□□□ 0.02
LIG1-201ENST00000263274 DNAAF4Q8WXU2 420 aa15.2■□□□□ 0.02
LIG1-201ENST00000263274 LRRC59Q96AG4 307 aaKnown RBP15.19■□□□□ 0.02
LIG1-201ENST00000263274 SNX14Q9Y5W7 946 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 SBNO1A3KN83 1393 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 CUL4AQ13619 759 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 ZNF530Q6P9A1 599 aaPredicted RBP15.19■□□□□ 0.02
LIG1-201ENST00000263274 GIMAP6Q6P9H5 292 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 C17orf53Q8N3J3 647 aaPredicted RBP15.19■□□□□ 0.02
LIG1-201ENST00000263274 DLC1Q96QB1 1528 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 BTBD11A6QL63 1104 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 SIRT1Q96EB6 747 aa15.19■□□□□ 0.02
LIG1-201ENST00000263274 CCDC8Q9H0W5 538 aaPredicted RBP15.19■□□□□ 0.02
LIG1-201ENST00000263274 SETD1BQ9UPS6 1966 aaKnown RBP15.19■□□□□ 0.02
LIG1-201ENST00000263274 STX6O43752 255 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 SYT1P21579 422 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 SPC24Q8NBT2 197 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 INTS4Q96HW7 963 aaKnown RBP15.18■□□□□ 0.02
LIG1-201ENST00000263274 TTC12Q9H892 705 aaPredicted RBP15.18■□□□□ 0.02
LIG1-201ENST00000263274 TAF7LQ5H9L4 462 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 AACSQ86V21 672 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 LIMCH1Q9UPQ0 1083 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.18■□□□□ 0.02
LIG1-201ENST00000263274 TTC21AQ8NDW8 1320 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 HSPA4P34932 840 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 STK3Q13188 491 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 CWF19L2Q2TBE0 894 aaKnown RBP15.18■□□□□ 0.02
LIG1-201ENST00000263274 ARHGEF10O15013 1369 aa15.18■□□□□ 0.02
LIG1-201ENST00000263274 IGSF1Q8N6C5 1336 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 SGSM2O43147 1006 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 RAB11FIP3O75154 756 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 SSH3Q8TE77 659 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 PDRG1Q9NUG6 133 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 GOLGA6L4A6NEF3 574 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 GJB2P29033 226 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 PSME1Q06323 249 aa15.17■□□□□ 0.02
LIG1-201ENST00000263274 JARID2Q92833 1246 aaPredicted RBP15.17■□□□□ 0.02
LIG1-201ENST00000263274 ZSCAN22P10073 491 aaPredicted RBP15.16■□□□□ 0.02
LIG1-201ENST00000263274 DNM1Q05193 864 aaKnown RBP15.16■□□□□ 0.02
LIG1-201ENST00000263274 FAM173BQ6P4H8 233 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 RUFY2Q8WXA3 655 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 STAP2Q9UGK3 403 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 TAOK2Q9UL54 1235 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.16■□□□□ 0.02
LIG1-201ENST00000263274 MAP3K5Q99683 1374 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 CAMK4Q16566 473 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 LARGE1O95461 756 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 ADCY5O95622 1261 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 ZKSCAN1P17029 563 aaPredicted RBP15.16■□□□□ 0.02
LIG1-201ENST00000263274 FOSBP53539 338 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 PTH1RQ03431 593 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 GPATCH3Q96I76 525 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 BOLA2Q9H3K6 86 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 NAP1L2Q9ULW6 460 aaPredicted RBP15.16■□□□□ 0.02
LIG1-201ENST00000263274 MAP3K2Q9Y2U5 619 aa15.16■□□□□ 0.02
LIG1-201ENST00000263274 OVOS2A0A0J9YW53 1432 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms