RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TMEM266Q2M3C6 531 aa22.3■■□□□ 1.16
UPF1-201ENST00000262803 FAM177A1Q8N128 213 aaPredicted RBP22.3■■□□□ 1.16
UPF1-201ENST00000262803 DISP3Q9P2K9 1392 aa22.3■■□□□ 1.16
UPF1-201ENST00000262803 ADGRL1O94910 1474 aa22.29■■□□□ 1.16
UPF1-201ENST00000262803 TTF1Q15361 905 aaPredicted RBP22.29■■□□□ 1.16
UPF1-201ENST00000262803 CCDC12Q8WUD4 166 aaPredicted RBP22.29■■□□□ 1.16
UPF1-201ENST00000262803 CCDC85AQ96PX6 553 aaPredicted RBP22.29■■□□□ 1.16
UPF1-201ENST00000262803 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
UPF1-201ENST00000262803 MKNK2Q9HBH9 465 aa22.29■■□□□ 1.16
UPF1-201ENST00000262803 DZIP1Q86YF9 867 aaKnown RBP22.29■■□□□ 1.16
UPF1-201ENST00000262803 IQCA1Q86XH1 822 aa22.29■■□□□ 1.16
UPF1-201ENST00000262803 TNPO1Q92973 898 aaKnown RBP22.29■■□□□ 1.16
UPF1-201ENST00000262803 BOLA2Q9H3K6 86 aa22.29■■□□□ 1.16
UPF1-201ENST00000262803 PTPRCP08575 1304 aa22.28■■□□□ 1.16
UPF1-201ENST00000262803 VPS36Q86VN1 386 aa22.28■■□□□ 1.16
UPF1-201ENST00000262803 CALRP27797 417 aaKnown RBP22.28■■□□□ 1.16
UPF1-201ENST00000262803 ANKRD18BA2A2Z9 1011 aa22.28■■□□□ 1.16
UPF1-201ENST00000262803 PIP4K2BP78356 416 aa22.28■■□□□ 1.16
UPF1-201ENST00000262803 CAMK4Q16566 473 aa22.28■■□□□ 1.16
UPF1-201ENST00000262803 NAPBQ9H115 298 aa22.27■■□□□ 1.16
UPF1-201ENST00000262803 IGHDP01880 384 aa22.27■■□□□ 1.16
UPF1-201ENST00000262803 EIF5P55010 431 aaKnown RBP22.27■■□□□ 1.16
UPF1-201ENST00000262803 RPGRQ92834 1020 aaKnown RBP22.27■■□□□ 1.16
UPF1-201ENST00000262803 TRAF1Q13077 416 aa22.27■■□□□ 1.16
UPF1-201ENST00000262803 LRRFIP2Q9Y608 721 aaKnown RBP22.27■■□□□ 1.16
UPF1-201ENST00000262803 GBP3Q9H0R5 595 aa22.27■■□□□ 1.16
UPF1-201ENST00000262803 FKBP15Q5T1M5 1219 aa22.27■■□□□ 1.15
UPF1-201ENST00000262803 SCAND2PQ9GZW5 306 aaPredicted RBP22.26■■□□□ 1.15
UPF1-201ENST00000262803 EPB41L2O43491 1005 aaKnown RBP22.26■■□□□ 1.15
UPF1-201ENST00000262803 BMP2KLQ5H9B9 411 aa22.26■■□□□ 1.15
UPF1-201ENST00000262803 DBF4Q9UBU7 674 aaPredicted RBP22.26■■□□□ 1.15
UPF1-201ENST00000262803 SPTY2D1Q68D10 685 aaPredicted RBP22.26■■□□□ 1.15
UPF1-201ENST00000262803 MPHOSPH6Q99547 160 aaKnown RBP22.26■■□□□ 1.15
UPF1-201ENST00000262803 CCDC150Q8NCX0 1101 aa22.26■■□□□ 1.15
UPF1-201ENST00000262803 ABCF2Q9UG63 623 aa22.26■■□□□ 1.15
UPF1-201ENST00000262803 DHX29Q7Z478 1369 aaKnown RBP22.25■■□□□ 1.15
UPF1-201ENST00000262803 ZNF444Q8N0Y2 327 aaPredicted RBP22.25■■□□□ 1.15
UPF1-201ENST00000262803 BICDL1Q6ZP65 573 aa22.25■■□□□ 1.15
UPF1-201ENST00000262803 CCDC148Q8NFR7 591 aa22.25■■□□□ 1.15
UPF1-201ENST00000262803 CCDC183Q5T5S1 534 aa22.25■■□□□ 1.15
UPF1-201ENST00000262803 CDC5LQ99459 802 aaKnown RBP22.25■■□□□ 1.15
UPF1-201ENST00000262803 CTAGE5O15320 804 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 IDI1Q13907 227 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 TBC1D9Q6ZT07 1266 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 TSPYL1Q9H0U9 437 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 WASLO00401 505 aaPredicted RBP22.24■■□□□ 1.15
UPF1-201ENST00000262803 KIAA0754O94854 1291 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 DNAAF4Q8WXU2 420 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 SPINK5Q9NQ38 1064 aaPredicted RBP22.24■■□□□ 1.15
UPF1-201ENST00000262803 USHBP1Q8N6Y0 703 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 CCDC178Q5BJE1 867 aa22.24■■□□□ 1.15
UPF1-201ENST00000262803 SEPT11Q9NVA2 429 aaKnown RBP22.23■■□□□ 1.15
UPF1-201ENST00000262803 ANKIB1Q9P2G1 1089 aa22.23■■□□□ 1.15
UPF1-201ENST00000262803 EXOC5O00471 708 aa22.23■■□□□ 1.15
UPF1-201ENST00000262803 BAG4O95429 457 aaKnown RBP22.23■■□□□ 1.15
UPF1-201ENST00000262803 LIMCH1Q9UPQ0 1083 aa22.23■■□□□ 1.15
UPF1-201ENST00000262803 MCM3P25205 808 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 FLIIQ13045 1269 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 STXBP4Q6ZWJ1 553 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 TBC1D32Q96NH3 1257 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 LRRC27Q9C0I9 530 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 MYD88Q99836 296 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 CCDC8Q9H0W5 538 aaPredicted RBP22.22■■□□□ 1.15
UPF1-201ENST00000262803 NOS1P29475 1434 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 SKIDA1Q1XH10 827 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 KIAA1328Q86T90 577 aa22.22■■□□□ 1.15
UPF1-201ENST00000262803 DENND4BO75064 1496 aaPredicted RBP22.21■■□□□ 1.15
UPF1-201ENST00000262803 ANO10Q9NW15 660 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 CFAP100Q494V2 611 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 SPA17Q15506 151 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 GRIN2AQ12879 1464 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 ZSCAN12O43309 604 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 PTCD1O75127 700 aaKnown RBP22.21■■□□□ 1.15
UPF1-201ENST00000262803 KIF5BP33176 963 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 PPP1R42Q7Z4L9 355 aa22.21■■□□□ 1.15
UPF1-201ENST00000262803 C14orf93Q9H972 538 aaKnown RBP22.21■■□□□ 1.15
UPF1-201ENST00000262803 TRMT112Q9UI30 125 aaKnown RBP22.21■■□□□ 1.15
UPF1-201ENST00000262803 TTC21AQ8NDW8 1320 aa22.2■■□□□ 1.15
UPF1-201ENST00000262803 GSTO1P78417 241 aa22.2■■□□□ 1.14
UPF1-201ENST00000262803 ENOX2Q16206 610 aaKnown RBP22.2■■□□□ 1.14
UPF1-201ENST00000262803 BAG3O95817 575 aa22.2■■□□□ 1.14
UPF1-201ENST00000262803 ARHGAP29Q52LW3 1261 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 IFNL2Q8IZJ0 200 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 CETN1Q12798 172 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 CCDC91Q7Z6B0 441 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 MBIPQ9NS73 344 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 IL16Q14005 1332 aa22.19■■□□□ 1.14
UPF1-201ENST00000262803 RRP9O43818 475 aaKnown RBP22.19■■□□□ 1.14
UPF1-201ENST00000262803 AMPD3Q01432 767 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 CATIPQ7Z7H3 387 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 SLC12A7Q9Y666 1083 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 ANKRD62A6NC57 917 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 MPRIPQ6WCQ1 1025 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 SCLT1Q96NL6 688 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 FBXO31Q5XUX0 539 aaPredicted RBP22.18■■□□□ 1.14
UPF1-201ENST00000262803 ZNF213O14771 459 aa22.18■■□□□ 1.14
UPF1-201ENST00000262803 CADPS2Q86UW7 1296 aa22.17■■□□□ 1.14
UPF1-201ENST00000262803 SSRP1Q08945 709 aaKnown RBP22.17■■□□□ 1.14
UPF1-201ENST00000262803 PDCL2Q8N4E4 241 aa22.17■■□□□ 1.14
UPF1-201ENST00000262803 AMOTL2Q9Y2J4 779 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms