RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 IFNL2Q8IZJ0 200 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 PI4KAP1Q8N8J0 262 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 LRRCC1Q9C099 1032 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 BEND3Q5T5X7 828 aa15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 HSCBQ8IWL3 235 aa15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 OSBPL3Q9H4L5 887 aa15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 SLC52A2Q9HAB3 445 aa15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 ZNF219Q9P2Y4 722 aaPredicted RBP15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 KDM6AO15550 1401 aaPredicted RBP15.98■□□□□ 0.15
SPTLC1-201ENST00000262554 SLKQ9H2G2 1235 aaPredicted RBP15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 RNF39Q9H2S5 420 aa15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 HYPKQ9NX55 129 aa15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 ADCY9O60503 1353 aa15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 IBTKQ9P2D0 1353 aaPredicted RBP15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 ANXA1P04083 346 aa15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 DEKP35659 375 aaKnown RBP15.97■□□□□ 0.15
SPTLC1-201ENST00000262554 SDSP20132 328 aa15.96■□□□□ 0.15
SPTLC1-201ENST00000262554 PDE1AP54750 535 aa15.96■□□□□ 0.15
SPTLC1-201ENST00000262554 ZNF790Q6PG37 636 aa15.96■□□□□ 0.15
SPTLC1-201ENST00000262554 SSH3Q8TE77 659 aa15.96■□□□□ 0.15
SPTLC1-201ENST00000262554 SLAIN2Q9P270 581 aa15.96■□□□□ 0.15
SPTLC1-201ENST00000262554 KDM4FA0A1W2PPD8 638 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 SNX21Q969T3 373 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 DCAF5Q96JK2 942 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 ANTXR1Q9H6X2 564 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 SOS2Q07890 1332 aaPredicted RBP15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 ZNF335Q9H4Z2 1342 aaPredicted RBP15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 ALDH1L1O75891 902 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 HSP90AB1P08238 724 aaKnown RBP15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 KSR2Q6VAB6 950 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 MAP3K2Q9Y2U5 619 aa15.95■□□□□ 0.14
SPTLC1-201ENST00000262554 PARP4Q9UKK3 1724 aaKnown RBP15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 C5P01031 1676 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 MRC1P22897 1456 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 PRAMEF22A3QJZ6 481 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 DDX58O95786 925 aaKnown RBP15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 POLA2Q14181 598 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 NFATC2IPQ8NCF5 419 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 DDX21Q9NR30 783 aaKnown RBP eCLIP15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 HDAC5Q9UQL6 1122 aa15.94■□□□□ 0.14
SPTLC1-201ENST00000262554 TUBGCP6Q96RT7 1819 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 RAB11FIP3O75154 756 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 NBPF7P0C2Y1 421 aaPredicted RBP15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 PROSER3Q2NL68 480 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 PPP1R42Q7Z4L9 355 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 PRDM11Q9NQV5 511 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 SALL3Q9BXA9 1300 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 MX1P20591 662 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 SLC39A6Q13433 755 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 KIF2CQ99661 725 aa15.93■□□□□ 0.14
SPTLC1-201ENST00000262554 WDR17Q8IZU2 1322 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 ABCA3Q99758 1704 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 CYP27B1O15528 508 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 SRGAP3O43295 1099 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 FRAT2O75474 233 aaPredicted RBP15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 TTC5Q8N0Z6 440 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 C9orf78Q9NZ63 289 aaPredicted RBP15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 SURF6O75683 361 aaKnown RBP15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 STAP2Q9UGK3 403 aa15.91■□□□□ 0.14
SPTLC1-201ENST00000262554 AOX1Q06278 1338 aa15.9■□□□□ 0.14
SPTLC1-201ENST00000262554 REC8O95072 547 aa15.9■□□□□ 0.14
SPTLC1-201ENST00000262554 HSP90AB4PQ58FF6 505 aa15.9■□□□□ 0.14
SPTLC1-201ENST00000262554 SPRYD3Q8NCJ5 442 aa15.9■□□□□ 0.14
SPTLC1-201ENST00000262554 USP26Q9BXU7 913 aa15.9■□□□□ 0.14
SPTLC1-201ENST00000262554 CABP4P57796 275 aa15.89■□□□□ 0.13
SPTLC1-201ENST00000262554 PDIA6Q15084 440 aa15.89■□□□□ 0.13
SPTLC1-201ENST00000262554 TOM1L2Q6ZVM7 507 aa15.89■□□□□ 0.13
SPTLC1-201ENST00000262554 LINS1Q8NG48 757 aa15.89■□□□□ 0.13
SPTLC1-201ENST00000262554 ERC2O15083 957 aa15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 SNRPA1P09661 255 aaKnown RBP15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 AIMP1Q12904 312 aaKnown RBP15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 KIF1BPQ96EK5 621 aa15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 ZNF496Q96IT1 587 aaPredicted RBP15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 FMNL2Q96PY5 1086 aa15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 MTX1Q13505 466 aa15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 CHMP5Q9NZZ3 219 aa15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 COL5A2P05997 1499 aaPredicted RBP15.88■□□□□ 0.13
SPTLC1-201ENST00000262554 PCDH11XQ9BZA7 1347 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 PCDH11YQ9BZA8 1340 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 NHSL1Q5SYE7 1610 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 TSHZ3Q63HK5 1081 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 LARP1Q6PKG0 1096 aaKnown RBP15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 RHPN1Q8TCX5 695 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 IL1RAPL2Q9NP60 686 aa15.87■□□□□ 0.13
SPTLC1-201ENST00000262554 LAMB4A4D0S4 1761 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 RABEP1Q15276 862 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 CWF19L2Q2TBE0 894 aaKnown RBP15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 ZCRB1Q8TBF4 217 aaKnown RBP15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 AK9Q5TCS8 1911 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 TRIM6-TRIM34B2RNG4 842 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 MYL6BP14649 208 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 NEXNQ0ZGT2 675 aa15.86■□□□□ 0.13
SPTLC1-201ENST00000262554 UTYO14607 1347 aa15.85■□□□□ 0.13
SPTLC1-201ENST00000262554 GRM8O00222 908 aa15.85■□□□□ 0.13
SPTLC1-201ENST00000262554 K7ELQ4 463 aaPredicted RBP15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 OS9Q13438 667 aaPredicted RBP15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 XAGE3Q8WTP9 111 aa15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 RILPL2Q969X0 211 aa15.84■□□□□ 0.13
SPTLC1-201ENST00000262554 CARD10Q9BWT7 1032 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms