RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 U2AF1L5P0DN76 240 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-202ENST00000262396 U2AF1Q01081 240 aaKnown RBP eCLIP16.36■□□□□ 0.213e-7■■□□□ 12.8
TRAF4-202ENST00000262396 DDR1Q08345 913 aa16.36■□□□□ 0.21
TRAF4-202ENST00000262396 NARFQ9UHQ1 456 aa16.36■□□□□ 0.21
TRAF4-202ENST00000262396 SCN11AQ9UI33 1791 aa16.36■□□□□ 0.21
TRAF4-202ENST00000262396 POLRMTO00411 1230 aaKnown RBP16.35■□□□□ 0.21
TRAF4-202ENST00000262396 CHRNA5P30532 468 aa16.35■□□□□ 0.21
TRAF4-202ENST00000262396 PRKAR2BP31323 418 aa16.35■□□□□ 0.21
TRAF4-202ENST00000262396 ADCY9O60503 1353 aa16.35■□□□□ 0.21
TRAF4-202ENST00000262396 BTBD11A6QL63 1104 aa16.34■□□□□ 0.21
TRAF4-202ENST00000262396 SERPINB2P05120 415 aa16.34■□□□□ 0.21
TRAF4-202ENST00000262396 C9orf131Q5VYM1 1079 aa16.34■□□□□ 0.21
TRAF4-202ENST00000262396 ZNF790Q6PG37 636 aa16.34■□□□□ 0.21
TRAF4-202ENST00000262396 FMNL2Q96PY5 1086 aa16.34■□□□□ 0.21
TRAF4-202ENST00000262396 TM4SF1P30408 202 aa16.33■□□□□ 0.2
TRAF4-202ENST00000262396 NFIXQ14938 502 aa16.33■□□□□ 0.2
TRAF4-202ENST00000262396 RNF181Q9P0P0 153 aa16.33■□□□□ 0.2
TRAF4-202ENST00000262396 N4BP2Q86UW6 1770 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-202ENST00000262396 HSPA6P17066 643 aa16.32■□□□□ 0.2
TRAF4-202ENST00000262396 MRC1P22897 1456 aa16.32■□□□□ 0.2
TRAF4-202ENST00000262396 MYH14Q7Z406 1995 aaKnown RBP16.32■□□□□ 0.2
TRAF4-202ENST00000262396 IL17REQ8NFR9 667 aa16.32■□□□□ 0.2
TRAF4-202ENST00000262396 ZNF496Q96IT1 587 aaPredicted RBP16.32■□□□□ 0.2
TRAF4-202ENST00000262396 TJP1Q07157 1748 aa16.31■□□□□ 0.2
TRAF4-202ENST00000262396 H0YIN7 160 aa16.31■□□□□ 0.2
TRAF4-202ENST00000262396 HEG1Q9ULI3 1381 aa16.3■□□□□ 0.2
TRAF4-202ENST00000262396 KDM2BQ8NHM5 1336 aa16.3■□□□□ 0.2
TRAF4-202ENST00000262396 KCNA3P22001 575 aa16.3■□□□□ 0.2
TRAF4-202ENST00000262396 C2CD5Q86YS7 1000 aa16.3■□□□□ 0.2
TRAF4-202ENST00000262396 TBC1D2BQ9UPU7 963 aa16.3■□□□□ 0.2
TRAF4-202ENST00000262396 PPP2R1AP30153 589 aa16.29■□□□□ 0.2
TRAF4-202ENST00000262396 TTLL6Q8N841 843 aa16.29■□□□□ 0.2
TRAF4-202ENST00000262396 ZNF622Q969S3 477 aaKnown RBP eCLIP16.29■□□□□ 0.2
TRAF4-202ENST00000262396 PHACTR3Q96KR7 559 aa16.29■□□□□ 0.2
TRAF4-202ENST00000262396 KCPQ6ZWJ8 1503 aa16.29■□□□□ 0.2
TRAF4-202ENST00000262396 KIF3CO14782 793 aa16.28■□□□□ 0.2
TRAF4-202ENST00000262396 TOMM70O94826 608 aa16.28■□□□□ 0.2
TRAF4-202ENST00000262396 EIF5P55010 431 aaKnown RBP16.28■□□□□ 0.2
TRAF4-202ENST00000262396 SETDB2Q96T68 719 aa16.28■□□□□ 0.2
TRAF4-202ENST00000262396 RSPH6AQ9H0K4 717 aa16.28■□□□□ 0.2
TRAF4-202ENST00000262396 KIF13BQ9NQT8 1826 aa16.28■□□□□ 0.2
TRAF4-202ENST00000262396 PDE6BP35913 854 aa16.27■□□□□ 0.2
TRAF4-202ENST00000262396 IL6STP40189 918 aaPredicted RBP16.27■□□□□ 0.2
TRAF4-202ENST00000262396 MCM10Q7L590 875 aa16.27■□□□□ 0.2
TRAF4-202ENST00000262396 NMRK2Q9NPI5 230 aa16.27■□□□□ 0.2
TRAF4-202ENST00000262396 COL3A1P02461 1466 aaPredicted RBP16.27■□□□□ 0.19
TRAF4-202ENST00000262396 A1BGP04217 495 aa16.26■□□□□ 0.19
TRAF4-202ENST00000262396 ST5P78524 1137 aa16.26■□□□□ 0.19
TRAF4-202ENST00000262396 TBC1D9BQ66K14 1250 aa16.26■□□□□ 0.19
TRAF4-202ENST00000262396 DZIP3Q86Y13 1208 aaKnown RBP16.26■□□□□ 0.19
TRAF4-202ENST00000262396 ZNF219Q9P2Y4 722 aaPredicted RBP16.26■□□□□ 0.19
TRAF4-202ENST00000262396 BCL2L12Q9HB09 334 aa16.25■□□□□ 0.19
TRAF4-202ENST00000262396 PDZRN3Q9UPQ7 1066 aa16.25■□□□□ 0.19
TRAF4-202ENST00000262396 ZNF652Q9Y2D9 606 aa16.25■□□□□ 0.19
TRAF4-202ENST00000262396 SNRPA1P09661 255 aaKnown RBP16.24■□□□□ 0.19
TRAF4-202ENST00000262396 APLP1P51693 650 aa16.24■□□□□ 0.19
TRAF4-202ENST00000262396 RASSF7Q02833 373 aa16.24■□□□□ 0.19
TRAF4-202ENST00000262396 CNBD1Q8NA66 436 aa16.24■□□□□ 0.19
TRAF4-202ENST00000262396 CARMIL3Q8ND23 1372 aa16.24■□□□□ 0.19
TRAF4-202ENST00000262396 KCNQ3O43525 872 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 LMNB1P20700 586 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 DCTN1Q14203 1278 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 CCDC24Q8N4L8 307 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 BRIP1Q9BX63 1249 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 PNNQ9H307 717 aaKnown RBP16.23■□□□□ 0.19
TRAF4-202ENST00000262396 RRAGCQ9HB90 399 aa16.23■□□□□ 0.19
TRAF4-202ENST00000262396 KIAA1551Q9HCM1 1747 aa16.22■□□□□ 0.19
TRAF4-202ENST00000262396 MAPK8IP3Q9UPT6 1336 aa16.22■□□□□ 0.19
TRAF4-202ENST00000262396 HTATSF1O43719 755 aaKnown RBP16.22■□□□□ 0.19
TRAF4-202ENST00000262396 PIP4K2AP48426 406 aaPredicted RBP16.22■□□□□ 0.19
TRAF4-202ENST00000262396 CEMIPQ8WUJ3 1361 aa16.22■□□□□ 0.19
TRAF4-202ENST00000262396 GTF2E1P29083 439 aaPredicted RBP16.21■□□□□ 0.19
TRAF4-202ENST00000262396 TAF7Q15545 349 aaPredicted RBP16.21■□□□□ 0.19
TRAF4-202ENST00000262396 NBPF5PQ86XG9 351 aaPredicted RBP16.21■□□□□ 0.19
TRAF4-202ENST00000262396 USP16Q9Y5T5 823 aa16.21■□□□□ 0.19
TRAF4-202ENST00000262396 VIRMAQ69YN4 1812 aaKnown RBP16.2■□□□□ 0.18
TRAF4-202ENST00000262396 PRR5LQ6MZQ0 368 aa16.2■□□□□ 0.18
TRAF4-202ENST00000262396 DPY19L2Q6NUT2 758 aa16.2■□□□□ 0.18
TRAF4-202ENST00000262396 RBM46Q8TBY0 533 aaKnown RBP16.2■□□□□ 0.18
TRAF4-202ENST00000262396 PNISRQ8TF01 805 aaKnown RBP16.2■□□□□ 0.18
TRAF4-202ENST00000262396 ADAMTS7Q9UKP4 1686 aa16.2■□□□□ 0.18
TRAF4-202ENST00000262396 FAM177BA6PVY3 158 aa16.19■□□□□ 0.18
TRAF4-202ENST00000262396 C21orf2O43822 256 aa16.19■□□□□ 0.18
TRAF4-202ENST00000262396 CAMTA2O94983 1202 aa16.19■□□□□ 0.18
TRAF4-202ENST00000262396 NGEFQ8N5V2 710 aa16.19■□□□□ 0.18
TRAF4-202ENST00000262396 CNKSR1Q969H4 720 aa16.19■□□□□ 0.18
TRAF4-202ENST00000262396 ARFGEF1Q9Y6D6 1849 aa16.18■□□□□ 0.18
TRAF4-202ENST00000262396 UBR2Q8IWV8 1755 aa16.18■□□□□ 0.18
TRAF4-202ENST00000262396 ZC3H4Q9UPT8 1303 aaKnown RBP16.18■□□□□ 0.18
TRAF4-202ENST00000262396 PRAMEF22A3QJZ6 481 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 FSTL1Q12841 308 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 SOGA3Q5TF21 947 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 CLEC4GQ6UXB4 293 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 TPTE2Q6XPS3 522 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 MIS18AQ9NYP9 233 aa16.17■□□□□ 0.18
TRAF4-202ENST00000262396 NIP7Q9Y221 180 aaKnown RBP eCLIP16.17■□□□□ 0.18
TRAF4-202ENST00000262396 VEGFAP15692 232 aaPredicted RBP16.16■□□□□ 0.18
TRAF4-202ENST00000262396 ERFEQ4G0M1 354 aa16.16■□□□□ 0.18
TRAF4-202ENST00000262396 SMC1BQ8NDV3 1235 aa16.16■□□□□ 0.18
TRAF4-202ENST00000262396 MASTLQ96GX5 879 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms