RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TMEM63CQ9P1W3 806 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 NFAT5O94916 1531 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 AMPHP49418 695 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 BRINP3Q76B58 766 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 PXDNQ92626 1479 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 GNAI2P04899 355 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 CLEC17AQ6ZS10 378 aa12.26□□□□□ -0.45
LIG3-201ENST00000262327 STK31Q9BXU1 1019 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 IL25Q9H293 177 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 LRRFIP2Q9Y608 721 aaKnown RBP12.25□□□□□ -0.45
LIG3-201ENST00000262327 LTBP4Q8N2S1 1624 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 NUTM1Q86Y26 1132 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 EYA1Q99502 592 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 CRB1P82279 1406 aa12.25□□□□□ -0.45
LIG3-201ENST00000262327 PHRF1Q9P1Y6 1649 aaKnown RBP12.25□□□□□ -0.45
LIG3-201ENST00000262327 MSNP26038 577 aaKnown RBP12.24□□□□□ -0.45
LIG3-201ENST00000262327 HAP1P54257 671 aaPredicted RBP12.24□□□□□ -0.45
LIG3-201ENST00000262327 XPCQ01831 940 aaPredicted RBP12.24□□□□□ -0.45
LIG3-201ENST00000262327 FLIIQ13045 1269 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 KIAA1211Q6ZU35 1233 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 USHBP1Q8N6Y0 703 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 PPP1R9BQ96SB3 815 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 ESYT1Q9BSJ8 1104 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 LRRCC1Q9C099 1032 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 TNS3Q68CZ2 1445 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 MX1P20591 662 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 ZSCAN30Q86W11 494 aa12.24□□□□□ -0.45
LIG3-201ENST00000262327 CWC22Q9HCG8 908 aaKnown RBP12.24□□□□□ -0.45
LIG3-201ENST00000262327 ARHGEF10O15013 1369 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 HOXC9P31274 260 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 CCT4P50991 539 aaKnown RBP12.23□□□□□ -0.45
LIG3-201ENST00000262327 ZNF445P59923 1031 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 KIAA0232Q92628 1395 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 SPATA31A3Q5VYP0 1347 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 RGPD1P0DJD0 1748 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 GCP02774 474 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 IP6K1Q92551 441 aa12.23□□□□□ -0.45
LIG3-201ENST00000262327 EIF2S2P20042 333 aaKnown RBP12.22□□□□□ -0.45
LIG3-201ENST00000262327 AEBP2Q6ZN18 517 aaPredicted RBP12.22□□□□□ -0.45
LIG3-201ENST00000262327 SOS2Q07890 1332 aaPredicted RBP12.22□□□□□ -0.45
LIG3-201ENST00000262327 CHMLP26374 656 aa12.22□□□□□ -0.45
LIG3-201ENST00000262327 PHAXQ9H814 394 aaKnown RBP12.22□□□□□ -0.45
LIG3-201ENST00000262327 MED1Q15648 1581 aaPredicted RBP12.21□□□□□ -0.45
LIG3-201ENST00000262327 ANXA1P04083 346 aa12.21□□□□□ -0.45
LIG3-201ENST00000262327 LMOD2Q6P5Q4 547 aa12.21□□□□□ -0.45
LIG3-201ENST00000262327 GADD45BO75293 160 aaPredicted RBP12.21□□□□□ -0.46
LIG3-201ENST00000262327 ARHGEF25Q86VW2 580 aa12.21□□□□□ -0.46
LIG3-201ENST00000262327 R3HCC1Q9Y3T6 440 aaKnown RBP12.21□□□□□ -0.46
LIG3-201ENST00000262327 LTN1O94822 1766 aa12.21□□□□□ -0.46
LIG3-201ENST00000262327 ARID3AQ99856 593 aa12.2□□□□□ -0.46
LIG3-201ENST00000262327 DDX17Q92841 729 aaKnown RBP12.2□□□□□ -0.46
LIG3-201ENST00000262327 OSBPL3Q9H4L5 887 aa12.2□□□□□ -0.46
LIG3-201ENST00000262327 CPA1P15085 419 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 ATP8B2P98198 1209 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 DDX54Q8TDD1 881 aaKnown RBP12.19□□□□□ -0.46
LIG3-201ENST00000262327 NHSL1Q5SYE7 1610 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 IGSF1Q8N6C5 1336 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 SURF6O75683 361 aaKnown RBP12.19□□□□□ -0.46
LIG3-201ENST00000262327 IL17REQ8NFR9 667 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 USP44Q9H0E7 712 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 KDRP35968 1356 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 MCCP23508 829 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 CCDC30Q5VVM6 783 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 PDCL3Q9H2J4 239 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.19□□□□□ -0.46
LIG3-201ENST00000262327 SALL3Q9BXA9 1300 aa12.19□□□□□ -0.46
LIG3-201ENST00000262327 UBTFL1P0CB47 393 aaPredicted RBP12.18□□□□□ -0.46
LIG3-201ENST00000262327 LRSAM1Q6UWE0 723 aa12.18□□□□□ -0.46
LIG3-201ENST00000262327 ABCC6O95255 1503 aa12.18□□□□□ -0.46
LIG3-201ENST00000262327 IBTKQ9P2D0 1353 aaPredicted RBP12.18□□□□□ -0.46
LIG3-201ENST00000262327 BRD1O95696 1058 aa12.18□□□□□ -0.46
LIG3-201ENST00000262327 GNAI3P08754 354 aa12.18□□□□□ -0.46
LIG3-201ENST00000262327 GNAT3A8MTJ3 354 aa12.17□□□□□ -0.46
LIG3-201ENST00000262327 PPP1R42Q7Z4L9 355 aa12.17□□□□□ -0.46
LIG3-201ENST00000262327 HDGFL1Q5TGJ6 251 aa12.17□□□□□ -0.46
LIG3-201ENST00000262327 SPG7Q9UQ90 795 aa12.17□□□□□ -0.46
LIG3-201ENST00000262327 CRYBG1Q9Y4K1 1723 aa12.17□□□□□ -0.46
LIG3-201ENST00000262327 NBPF7P0C2Y1 421 aaPredicted RBP12.16□□□□□ -0.46
LIG3-201ENST00000262327 CPDO75976 1380 aa12.16□□□□□ -0.46
LIG3-201ENST00000262327 OFD1O75665 1012 aa12.16□□□□□ -0.46
LIG3-201ENST00000262327 CWC27Q6UX04 472 aaKnown RBP12.16□□□□□ -0.46
LIG3-201ENST00000262327 USP48Q86UV5 1035 aa12.16□□□□□ -0.46
LIG3-201ENST00000262327 SRGAP3O43295 1099 aa12.15□□□□□ -0.46
LIG3-201ENST00000262327 KCNQ3O43525 872 aa12.15□□□□□ -0.46
LIG3-201ENST00000262327 PTMAP06454 111 aaKnown RBP12.15□□□□□ -0.46
LIG3-201ENST00000262327 ZNF830Q96NB3 372 aaPredicted RBP12.15□□□□□ -0.46
LIG3-201ENST00000262327 RASEFQ8IZ41 740 aa12.15□□□□□ -0.46
LIG3-201ENST00000262327 CUL4AQ13619 759 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 PDLIM2Q96JY6 352 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 FAM13BQ9NYF5 915 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 AHDC1Q5TGY3 1603 aaPredicted RBP12.14□□□□□ -0.47
LIG3-201ENST00000262327 SOS1Q07889 1333 aaPredicted RBP12.14□□□□□ -0.47
LIG3-201ENST00000262327 NOL7Q9UMY1 257 aaKnown RBP12.14□□□□□ -0.47
LIG3-201ENST00000262327 CNPY2Q9Y2B0 182 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 PLCB2Q00722 1185 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 LGR6Q9HBX8 967 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 NCAPD2Q15021 1401 aa12.14□□□□□ -0.47
LIG3-201ENST00000262327 OS9Q13438 667 aaPredicted RBP12.13□□□□□ -0.47
LIG3-201ENST00000262327 TAF7Q15545 349 aaPredicted RBP12.13□□□□□ -0.47
LIG3-201ENST00000262327 RHPN1Q8TCX5 695 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms