RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 COL15A1P39059 1388 aa29.66■■■□□ 2.34
VTI1B-201ENST00000216456 KCNA3P22001 575 aa29.66■■■□□ 2.34
VTI1B-201ENST00000216456 ZNF790Q6PG37 636 aa29.66■■■□□ 2.34
VTI1B-201ENST00000216456 ZNF526Q8TF50 670 aaPredicted RBP29.66■■■□□ 2.34
VTI1B-201ENST00000216456 BCL2L12Q9HB09 334 aa29.66■■■□□ 2.34
VTI1B-201ENST00000216456 POLRMTO00411 1230 aaKnown RBP29.65■■■□□ 2.34
VTI1B-201ENST00000216456 ZPR1O75312 459 aa29.65■■■□□ 2.34
VTI1B-201ENST00000216456 TM4SF1P30408 202 aa29.65■■■□□ 2.34
VTI1B-201ENST00000216456 VSIG10Q8N0Z9 540 aa29.65■■■□□ 2.34
VTI1B-201ENST00000216456 ADCY9O60503 1353 aa29.64■■■□□ 2.34
VTI1B-201ENST00000216456 SIPA1L3O60292 1781 aaPredicted RBP29.64■■■□□ 2.34
VTI1B-201ENST00000216456 GIGYF1O75420 1035 aaPredicted RBP29.64■■■□□ 2.34
VTI1B-201ENST00000216456 NUDCQ9Y266 331 aa29.64■■■□□ 2.34
VTI1B-201ENST00000216456 CEMIPQ8WUJ3 1361 aa29.64■■■□□ 2.33
VTI1B-201ENST00000216456 MCM10Q7L590 875 aa29.63■■■□□ 2.33
VTI1B-201ENST00000216456 HEG1Q9ULI3 1381 aa29.63■■■□□ 2.33
VTI1B-201ENST00000216456 CHRNA5P30532 468 aa29.62■■■□□ 2.33
VTI1B-201ENST00000216456 DCTN1Q14203 1278 aa29.62■■■□□ 2.33
VTI1B-201ENST00000216456 NFIXQ14938 502 aa29.62■■■□□ 2.33
VTI1B-201ENST00000216456 NARFQ9UHQ1 456 aa29.62■■■□□ 2.33
VTI1B-201ENST00000216456 FCHSD2O94868 740 aa29.6■■■□□ 2.33
VTI1B-201ENST00000216456 PRAMEF22A3QJZ6 481 aa29.58■■■□□ 2.33
VTI1B-201ENST00000216456 BTBD11A6QL63 1104 aa29.58■■■□□ 2.33
VTI1B-201ENST00000216456 EIF5P55010 431 aaKnown RBP29.58■■■□□ 2.33
VTI1B-201ENST00000216456 ZNF330Q9Y3S2 320 aaPredicted RBP29.58■■■□□ 2.33
VTI1B-201ENST00000216456 STARD3NLO95772 234 aa29.57■■■□□ 2.32
VTI1B-201ENST00000216456 A1BGP04217 495 aa29.57■■■□□ 2.32
VTI1B-201ENST00000216456 PIP4K2AP48426 406 aaPredicted RBP29.57■■■□□ 2.32
VTI1B-201ENST00000216456 ARHGAP27Q6ZUM4 889 aa29.57■■■□□ 2.32
VTI1B-201ENST00000216456 SENP3-EIF4A1A0A087X0R7 540 aa29.56■■■□□ 2.32
VTI1B-201ENST00000216456 BICDL1Q6ZP65 573 aa29.56■■■□□ 2.32
VTI1B-201ENST00000216456 BRCA1P38398 1863 aaKnown RBP29.56■■■□□ 2.32
VTI1B-201ENST00000216456 FMNL2Q96PY5 1086 aa29.55■■■□□ 2.32
VTI1B-201ENST00000216456 GPBP1L1Q9HC44 474 aaPredicted RBP29.54■■■□□ 2.32
VTI1B-201ENST00000216456 TBC1D2BQ9UPU7 963 aa29.54■■■□□ 2.32
VTI1B-201ENST00000216456 USP16Q9Y5T5 823 aa29.53■■■□□ 2.32
VTI1B-201ENST00000216456 CARMIL3Q8ND23 1372 aa29.52■■■□□ 2.32
VTI1B-201ENST00000216456 AFDNP55196 1824 aaKnown RBP29.52■■■□□ 2.32
VTI1B-201ENST00000216456 SERPINB2P05120 415 aa29.52■■■□□ 2.32
VTI1B-201ENST00000216456 PIM2Q9P1W9 311 aa29.52■■■□□ 2.32
VTI1B-201ENST00000216456 TBC1D9BQ66K14 1250 aa29.51■■■□□ 2.31
VTI1B-201ENST00000216456 CCDC24Q8N4L8 307 aa29.5■■■□□ 2.31
VTI1B-201ENST00000216456 RTF1Q92541 710 aaKnown RBP29.5■■■□□ 2.31
VTI1B-201ENST00000216456 MIS18AQ9NYP9 233 aa29.5■■■□□ 2.31
VTI1B-201ENST00000216456 DALRD3Q5D0E6 543 aaKnown RBP29.49■■■□□ 2.31
VTI1B-201ENST00000216456 TEX13AQ9BXU3 409 aaPredicted RBP29.48■■■□□ 2.31
VTI1B-201ENST00000216456 NRXN2Q9P2S2 1712 aa29.47■■■□□ 2.31
VTI1B-201ENST00000216456 IL6STP40189 918 aaPredicted RBP29.46■■■□□ 2.31
VTI1B-201ENST00000216456 A0A087WZG4 1122 aa29.45■■■□□ 2.31
VTI1B-201ENST00000216456 PLEKHF1Q96S99 279 aa29.45■■■□□ 2.31
VTI1B-201ENST00000216456 THUMPD2Q9BTF0 503 aaKnown RBP29.45■■■□□ 2.31
VTI1B-201ENST00000216456 CAMTA2O94983 1202 aa29.44■■■□□ 2.3
VTI1B-201ENST00000216456 SCN7AQ01118 1682 aa29.44■■■□□ 2.3
VTI1B-201ENST00000216456 ARFGEF1Q9Y6D6 1849 aa29.43■■■□□ 2.3
VTI1B-201ENST00000216456 C9orf131Q5VYM1 1079 aa29.43■■■□□ 2.3
VTI1B-201ENST00000216456 KIF3CO14782 793 aa29.41■■■□□ 2.3
VTI1B-201ENST00000216456 DDX10Q13206 875 aaKnown RBP29.41■■■□□ 2.3
VTI1B-201ENST00000216456 NBPF26B4DH59 902 aa29.4■■■□□ 2.3
VTI1B-201ENST00000216456 HTATSF1O43719 755 aaKnown RBP29.4■■■□□ 2.3
VTI1B-201ENST00000216456 SNRPA1P09661 255 aaKnown RBP29.4■■■□□ 2.3
VTI1B-201ENST00000216456 NBPF10Q6P3W6 841 aaKnown RBP29.4■■■□□ 2.3
VTI1B-201ENST00000216456 DZIP3Q86Y13 1208 aaKnown RBP29.4■■■□□ 2.3
VTI1B-201ENST00000216456 C2CD5Q86YS7 1000 aa29.4■■■□□ 2.3
VTI1B-201ENST00000216456 NBPF15Q8N660 670 aa29.4■■■□□ 2.3
VTI1B-201ENST00000216456 RASSF7Q02833 373 aa29.39■■■□□ 2.3
VTI1B-201ENST00000216456 TAF7Q15545 349 aaPredicted RBP29.39■■■□□ 2.3
VTI1B-201ENST00000216456 CEP350Q5VT06 3117 aa29.38■■■□□ 2.29
VTI1B-201ENST00000216456 DLG5Q8TDM6 1919 aa29.38■■■□□ 2.29
VTI1B-201ENST00000216456 PRR5LQ6MZQ0 368 aa29.38■■■□□ 2.29
VTI1B-201ENST00000216456 NMRK2Q9NPI5 230 aa29.37■■■□□ 2.29
VTI1B-201ENST00000216456 PRELPP51888 382 aa29.36■■■□□ 2.29
VTI1B-201ENST00000216456 NFE2L2Q16236 605 aa29.36■■■□□ 2.29
VTI1B-201ENST00000216456 RNF181Q9P0P0 153 aa29.36■■■□□ 2.29
VTI1B-201ENST00000216456 ANKRD31Q8N7Z5 1873 aa29.36■■■□□ 2.29
VTI1B-201ENST00000216456 NPM2Q86SE8 214 aaKnown RBP29.34■■■□□ 2.29
VTI1B-201ENST00000216456 H0YIN7 160 aa29.33■■■□□ 2.29
VTI1B-201ENST00000216456 BCORQ6W2J9 1755 aa29.33■■■□□ 2.29
VTI1B-201ENST00000216456 DLEC1Q9Y238 1755 aa29.32■■■□□ 2.28
VTI1B-201ENST00000216456 NEFMP07197 916 aa29.32■■■□□ 2.28
VTI1B-201ENST00000216456 TTLL6Q8N841 843 aa29.32■■■□□ 2.28
VTI1B-201ENST00000216456 SETDB2Q96T68 719 aa29.32■■■□□ 2.28
VTI1B-201ENST00000216456 ZNF219Q9P2Y4 722 aaPredicted RBP29.32■■■□□ 2.28
VTI1B-201ENST00000216456 ZNF622Q969S3 477 aaKnown RBP eCLIP29.31■■■□□ 2.289e-7■■□□□ 11.8
VTI1B-201ENST00000216456 COL11A2P13942 1736 aaPredicted RBP29.31■■■□□ 2.28
VTI1B-201ENST00000216456 MAPK8IP3Q9UPT6 1336 aa29.29■■■□□ 2.28
VTI1B-201ENST00000216456 RALBP1Q15311 655 aa29.29■■■□□ 2.28
VTI1B-201ENST00000216456 NGEFQ8N5V2 710 aa29.29■■■□□ 2.28
VTI1B-201ENST00000216456 CNBD1Q8NA66 436 aa29.29■■■□□ 2.28
VTI1B-201ENST00000216456 BRIP1Q9BX63 1249 aa29.29■■■□□ 2.28
VTI1B-201ENST00000216456 EIF4A1P60842 406 aaKnown RBP29.28■■■□□ 2.28
VTI1B-201ENST00000216456 HLFQ16534 295 aa29.28■■■□□ 2.28
VTI1B-201ENST00000216456 KDM3BQ7LBC6 1761 aa29.28■■■□□ 2.28
VTI1B-201ENST00000216456 SBF1O95248 1867 aa29.27■■■□□ 2.28
VTI1B-201ENST00000216456 FAM177BA6PVY3 158 aa29.26■■■□□ 2.27
VTI1B-201ENST00000216456 NFKBIEO00221 500 aa29.26■■■□□ 2.27
VTI1B-201ENST00000216456 NPHP1O15259 732 aa29.26■■■□□ 2.27
VTI1B-201ENST00000216456 PDE6BP35913 854 aa29.25■■■□□ 2.27
VTI1B-201ENST00000216456 CCDC146Q8IYE0 955 aa29.25■■■□□ 2.27
VTI1B-201ENST00000216456 RRP7AQ9Y3A4 280 aaKnown RBP29.25■■■□□ 2.27
VTI1B-201ENST00000216456 C21orf2O43822 256 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms