RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 OR6C1Q96RD1 312 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SERPINI1Q99574 410 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 MS4A8Q9BY19 250 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SLC6A16Q9GZN6 736 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SPRTNQ9H040 489 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TUBB1Q9H4B7 451 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 DMRT3Q9NQL9 472 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 RARRES3Q9UL19 164 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 ADAMTS20P59510 1910 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 PTPRBP23467 1997 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 FRYLO94915 3013 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 GMNCA6NCL1 334 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 TRPC5OSA6NMA1 111 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 NPIPB8E9PQR5 432 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 ZNF195O14628 629 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 POLR1CO15160 346 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 NDUFS4O43181 175 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 OR2B3O76000 313 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 EIF2S1P05198 315 aaKnown RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SERPIND1P05546 499 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SMIM10L1P0DMW3 83 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 CCL4P13236 92 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 HTR6P50406 440 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 ARSFP54793 590 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 ITGA1P56199 1179 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 CLDN6P56747 220 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 STXBP1P61764 594 aaKnown RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 CYP4F2P78329 520 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 BTKQ06187 659 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 FOXM1Q08050 763 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 DDX39BQ13838 428 aaKnown RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 GRM7Q14831 915 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 NDUFA9Q16795 377 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 TMEM35AQ53FP2 167 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 GARNL3Q5VVW2 1013 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 ADNP2Q6IQ32 1131 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SCIMPQ6UWF3 145 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 Q6ZSR9 355 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 PPP1R3BQ86XI6 285 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 RNF175Q8N4F7 328 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 CSNK1A1LQ8N752 337 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 TTC29Q8NA56 475 aaPredicted RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SRFBP1Q8NEF9 429 aaKnown RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SMIM10Q96HG1 83 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 METTL2AQ96IZ6 378 aaKnown RBP11.74□□□□□ -0.53
LINC00339-213ENST00000642137 TAAR9Q96RI9 348 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 B3GNT4Q9C0J1 378 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SLC39A1Q9NY26 324 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 AHSPQ9NZD4 102 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 VPS29Q9UBQ0 182 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 LOXL2Q9Y4K0 774 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 SLC22A7Q9Y694 548 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 KIF26BQ2KJY2 2108 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 KNTC1P50748 2209 aa11.74□□□□□ -0.53
LINC00339-213ENST00000642137 HYKKA2RU49 373 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 SRRM3A6NNA2 597 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 PLD2O14939 933 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 PIP5K1BO14986 540 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 P2RX6O15547 441 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 RGS14O43566 566 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 CTSBP07858 339 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 LINC00032P0C843 101 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 ALOX15P16050 662 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 PRPH2P23942 346 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 GCGRP47871 477 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 RAB15P59190 212 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 HKDC1Q2TB90 917 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 KHDRBS2Q5VWX1 349 aaKnown RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 FAM219BQ5XKK7 198 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 TMEM214Q6NUQ4 689 aaKnown RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 CEACAM20Q6UY09 585 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 DDIASQ8IXT1 998 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 ARHGEF39Q8N4T4 335 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 KCT2Q8NC54 265 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 CHTF18Q8WVB6 975 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 RGMAQ96B86 450 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 MS4A6EQ96DS6 147 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 MACROD1Q9BQ69 325 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 SIKE1Q9BRV8 207 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 CENPKQ9BS16 269 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 ZPBPQ9BS86 351 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 REXO4Q9GZR2 422 aaKnown RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 OR51B5Q9H339 312 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 KLHL31Q9H511 634 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 MEAF6Q9HAF1 191 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 PRM3Q9NNZ6 103 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 FGFR1OP2Q9NVK5 253 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 MARCOQ9UEW3 520 aaPredicted RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 RUVBL1Q9Y265 456 aaKnown RBP11.73□□□□□ -0.53
LINC00339-213ENST00000642137 CCL27Q9Y4X3 112 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 USH1CQ9Y6N9 552 aa11.73□□□□□ -0.53
LINC00339-213ENST00000642137 AGRPO00253 132 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 VPS4BO75351 444 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SKAP2O75563 359 aaPredicted RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 RSL1D1O76021 490 aaKnown RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SEMA3DO95025 777 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 ETHE1O95571 254 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 HBQ1P09105 142 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 JMJD7P0C870 316 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms