RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PLPP5Q8NEB5 264 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 OR5T3Q8NGG3 340 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 LILRB4Q8NHJ6 448 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 IL22Q9GZX6 179 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 LACRTQ9GZZ8 138 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 TP63Q9H3D4 680 aaPredicted RBP13.77□□□□□ -0.21
PNKP-218ENST00000625299 CCM2LQ9NUG4 571 aaPredicted RBP13.77□□□□□ -0.21
PNKP-218ENST00000625299 KCNN3Q9UGI6 736 aa13.77□□□□□ -0.21
PNKP-218ENST00000625299 ABCA4P78363 2273 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 MAGEB17A8MXT2 336 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 LIASO43766 372 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 ZSCAN5DPP0CG00 497 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 ARNTP27540 789 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 COILP38432 576 aaPredicted RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 GPR85P60893 370 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 OLR1P78380 273 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 OASLQ15646 514 aaKnown RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 TYSND1Q2T9J0 566 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 ASPGQ86U10 573 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 SLC26A11Q86WA9 606 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 SULF2Q8IWU5 870 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 LRRC56Q8IYG6 542 aaPredicted RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 CAMKVQ8NCB2 501 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 ELP5Q8TE02 316 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 C1orf54Q8WWF1 131 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 MFSD3Q96ES6 412 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 SEC16BQ96JE7 1060 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 PANX2Q96RD6 677 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 SLC30A3Q99726 388 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 FOXC2Q99958 501 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 CCDC177Q9NQR7 707 aaPredicted RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 LANCL2Q9NS86 450 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 TMEM184CQ9NVA4 438 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 BFARQ9NZS9 450 aa13.76□□□□□ -0.21
PNKP-218ENST00000625299 KLF13Q9Y2Y9 288 aaPredicted RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 EPN1Q9Y6I3 576 aaPredicted RBP13.76□□□□□ -0.21
PNKP-218ENST00000625299 MIF4GDA9UHW6 222 aaKnown RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 KLRC4-KLRK1H3BQV0 150 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 FCHO1O14526 889 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 PEX1O43933 1283 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 B4GALT2O60909 372 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 F7P08709 466 aaPredicted RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 HOXD4P09016 255 aaPredicted RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 MGAT1P26572 445 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 IMPA1P29218 277 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 HLCSP50747 726 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 NUP107P57740 925 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 MLF1P58340 268 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 TBPL1P62380 186 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 BASP1P80723 227 aaKnown RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 FOLH1Q04609 750 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 PMPCAQ10713 525 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 CEBPEQ15744 281 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 TTLL9Q3SXZ7 439 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 CMPK2Q5EBM0 449 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 PCGF5Q86SE9 256 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 PRELID2Q8N945 189 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 ACRBPQ8NEB7 543 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 OR5M3Q8NGP4 307 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 SLC13A3Q8WWT9 602 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 ALKBH8Q96BT7 664 aaKnown RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 OR1F2PQ96R84 312 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 GSX1Q9H4S2 264 aaPredicted RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 SYBUQ9NX95 663 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 DNAJB12Q9NXW2 375 aaKnown RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 PAK5Q9P286 719 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 SH2B3Q9UQQ2 575 aa13.75□□□□□ -0.21
PNKP-218ENST00000625299 REXO2Q9Y3B8 237 aaKnown RBP13.75□□□□□ -0.21
PNKP-218ENST00000625299 PHF3Q92576 2039 aaKnown RBP13.74□□□□□ -0.21
PNKP-218ENST00000625299 DNAJC13O75165 2243 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 ZNF407Q9C0G0 2248 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 KCNE1BA0A087WTH5 132 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 FAM221AA4D161 298 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 A8MUA0 341 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 BTNL10A8MVZ5 291 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 ZBTB14O43829 449 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 FHP07954 510 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 SLC35G6P0C7Q6 338 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 HRH2P25021 359 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 CLCN7P51798 805 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 CAPN13Q6MZZ7 669 aaPredicted RBP13.74□□□□□ -0.21
PNKP-218ENST00000625299 ARHGAP11AQ6P4F7 1023 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 KIAA1328Q86T90 577 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 SYCE1Q8N0S2 351 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 CLYBLQ8N0X4 340 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 CYP4Z2PQ8N1L4 340 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 OR52N2Q8NGI0 321 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 OR10Q1Q8NGQ4 319 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 GIMAP7Q8NHV1 300 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 TBC1D20Q96BZ9 403 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 THAP11Q96EK4 314 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 PTCHD1Q96NR3 888 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 DEFB126Q9BYW3 111 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 DEFB127Q9H1M4 99 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 CXXC4Q9H2H0 198 aa13.74□□□□□ -0.21
PNKP-218ENST00000625299 NPIPA2E9PIF3 369 aa13.73□□□□□ -0.21
PNKP-218ENST00000625299 NPIPA3F8WFD2 350 aa13.73□□□□□ -0.21
PNKP-218ENST00000625299 CDK2AP1O14519 115 aa13.73□□□□□ -0.21
PNKP-218ENST00000625299 LCMT2O60294 686 aaKnown RBP13.73□□□□□ -0.21
PNKP-218ENST00000625299 DNAJB6O75190 326 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms