RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CLEC3AO75596 197 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 CAPN1P07384 714 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 GRK2P25098 689 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 HYAL2Q12891 473 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 MANEAQ5SRI9 462 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 YOD1Q5VVQ6 348 aaPredicted RBP18.78■□□□□ 0.6
UPF3A-211ENST00000618700 GARNL3Q5VVW2 1013 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 TMEM214Q6NUQ4 689 aaKnown RBP18.78■□□□□ 0.6
UPF3A-211ENST00000618700 CUZD1Q86UP6 607 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 CDYL2Q8N8U2 506 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 HUS1BQ8NHY5 278 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 ZNF473Q8WTR7 871 aaKnown RBP18.78■□□□□ 0.6
UPF3A-211ENST00000618700 MACROD1Q9BQ69 325 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 NLNQ9BYT8 704 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 ULBP3Q9BZM4 244 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 AICDAQ9GZX7 198 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 IRAK4Q9NWZ3 460 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 SRPK3Q9UPE1 567 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 ANKDD1BA6NHY2 528 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 FFAR3O14843 346 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 GPR42O15529 346 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 CPNE3O75131 537 aaKnown RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 STK17BO94768 372 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 KIAA0754O94854 1291 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 MED26O95402 600 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 DLGAP3O95886 979 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 SERPINA6P08185 405 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 PCNAP12004 261 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 SLC5A2P31639 672 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 PIK3CBP42338 1070 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 FOXA1P55317 472 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 SNRPNP63162 240 aaKnown RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 C10orf62Q5T681 223 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 FRG2Q64ET8 278 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 RHBDD2Q6NTF9 364 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 TTC29Q8NA56 475 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 FRG2BQ96QU4 278 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 SHCBP1LQ9BZQ2 653 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 ACTR5Q9H9F9 607 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 EML4Q9HC35 981 aaKnown RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 DMRT3Q9NQL9 472 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 THSD1Q9NS62 852 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 CUTCQ9NTM9 273 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 ADGRE2Q9UHX3 823 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 PPT2Q9UMR5 302 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 TMEM184BQ9Y519 407 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-211ENST00000618700 AK5Q9Y6K8 562 aa18.77■□□□□ 0.6
UPF3A-211ENST00000618700 FREM2Q5SZK8 3169 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 HYKKA2RU49 373 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 FOXE1O00358 373 aaPredicted RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 ITM2AO43736 263 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 NEFHP12036 1026 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 CD82P27701 267 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 RORAP35398 523 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 ARSFP54793 590 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 ABCE1P61221 599 aaKnown RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 RGS1Q08116 209 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 BST1Q10588 318 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 IFT88Q13099 833 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 STX3Q13277 289 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 ADPRMQ3LIE5 342 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 TCHHL1Q5QJ38 904 aaPredicted RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 TRIM42Q8IWZ5 723 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 RNF175Q8N4F7 328 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 SLC38A9Q8NBW4 561 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 KCT2Q8NC54 265 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 METTL6Q8TCB7 284 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 GATA6Q92908 595 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF578Q96N58 590 aaPredicted RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 LRFN5Q96NI6 719 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 KCNA7Q96RP8 456 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 NDC1Q9BTX1 674 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 MS4A8Q9BY19 250 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 INTS9Q9NV88 658 aaKnown RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 SNX6Q9UNH7 406 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 MRPS2Q9Y399 296 aaKnown RBP18.76■□□□□ 0.59
UPF3A-211ENST00000618700 SDK2Q58EX2 2172 aa18.76■□□□□ 0.59
UPF3A-211ENST00000618700 MAGEB17A8MXT2 336 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 C4orf51C9J302 202 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 MANBAO00462 879 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 KLF11O14901 512 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 LYPLA1O75608 230 aaPredicted RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 SNUPNO95149 360 aaKnown RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 SERPIND1P05546 499 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 HBQ1P09105 142 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 HMOX2P30519 316 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 HNRNPH1P31943 449 aaKnown RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 HTR6P50406 440 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 MUM1Q2TAK8 710 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 FAM214AQ32MH5 1076 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 TBC1D25Q3MII6 688 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 ZNF385CQ66K41 422 aaPredicted RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 TTC19Q6DKK2 380 aaPredicted RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 AFAP1L2Q8N4X5 818 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 RNF31Q96EP0 1072 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 SORT1Q99523 831 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 MTERF1Q99551 399 aaKnown RBP18.75■□□□□ 0.59
UPF3A-211ENST00000618700 C20orf27Q9GZN8 174 aa18.75■□□□□ 0.59
UPF3A-211ENST00000618700 ELOVL6Q9H5J4 265 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms