RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 C17orf64Q86WR6 236 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TMEM151BQ8IW70 566 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 GPALPP1Q8IXQ4 340 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 LRRC57Q8N9N7 239 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TC2NQ8N9U0 490 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 FAM57AQ8TBR7 257 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 LKAAEAR1Q8TD35 194 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CALML6Q8TD86 181 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CREB3L4Q8TEY5 395 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ZNF480Q8WV37 535 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 SLC13A3Q8WWT9 602 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ASB11Q8WXH4 323 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 LPGAT1Q92604 370 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ALG3Q92685 438 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 RND1Q92730 232 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 KCNJ9Q92806 393 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 FOXC2Q99958 501 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 FAM118BQ9BPY3 351 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CCDC77Q9BR77 488 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 HAUS8Q9BT25 410 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 KIFC1Q9BW19 673 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 DEFB126Q9BYW3 111 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CHRAC1Q9NRG0 131 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 HOMER3Q9NSC5 361 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 TREX1Q9NSU2 369 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 PIH1D1Q9NWS0 290 aaKnown RBP5.92□□□□□ -1.46
CUX1-220ENST00000607092 SAMD15Q9P1V8 674 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 ZKSCAN5Q9Y2L8 839 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 CPAMD8Q8IZJ3 1885 aa5.92□□□□□ -1.46
CUX1-220ENST00000607092 NBEAL1Q6ZS30 2694 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 IGKV1-8A0A0C4DH67 115 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 FIGNL2A6NMB9 653 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 GOLGA6L6A8MZA4 724 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 H7BY64 318 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 PSMD12O00232 456 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 BCKDKO14874 412 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HAT1O14929 419 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 LIASO43766 372 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 AVILO75366 819 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 VAPBO95292 243 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 MED26O95402 600 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 NADKO95544 446 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 SLC16A8O95907 504 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SYF2O95926 243 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 FHP07954 510 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 CELA2AP08217 269 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HIST1H2AGP0C0S8 130 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 IGFBP2P18065 325 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HIST1H2ADP20671 130 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 FMO4P31512 558 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SKIV2L2P42285 1042 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 GDF10P55107 478 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SESN2P58004 480 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 SLC26A5P58743 744 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 MAT1AQ00266 395 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 RGS1Q08116 209 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 MYBPHQ13203 477 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SP140Q13342 867 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 PWP1Q13610 501 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 THOC5Q13769 683 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 RCN2Q14257 317 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 FASTKQ14296 549 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 SEMA3AQ14563 771 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 RPS6KA1Q15418 735 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 OASLQ15646 514 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 PHKG1Q16816 387 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 CCSMST1Q4G0I0 132 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 LCE2DQ5TA82 110 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 LANCL3Q6ZV70 420 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 ABHD13Q7L211 337 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 ASPGQ86U10 573 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 TMEM200AQ86VY9 491 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 REXO1L1PQ8IX06 675 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 DMRTC2Q8IXT2 367 aaPredicted RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 ARMC10Q8N2F6 343 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 ARHGEF39Q8N4T4 335 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 RNF10Q8N5U6 811 aaKnown RBP5.91□□□□□ -1.46
CUX1-220ENST00000607092 RNF214Q8ND24 703 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 OR9A4Q8NGU2 314 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 C16orf52Q8NHV5 167 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 ELP5Q8TE02 316 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 ATL1Q8WXF7 558 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 TBC1D20Q96BZ9 403 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HIST1H2AHQ96KK5 128 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 CCDC138Q96M89 665 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 ZNF778Q96MU6 729 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 PRAP1Q96NZ9 151 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 BIRC8Q96P09 236 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SIGLEC12Q96PQ1 595 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 PKP4Q99569 1192 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HIST1H2AJQ99878 128 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 MESP1Q9BRJ9 268 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 H2AFJQ9BTM1 129 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 TRIM54Q9BYV2 358 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 TRIM5Q9C035 493 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 SLC6A16Q9GZN6 736 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 TIMMDC1Q9NPL8 285 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 HCN3Q9P1Z3 774 aa5.91□□□□□ -1.46
CUX1-220ENST00000607092 MARCH4Q9P2E8 410 aaPredicted RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms