RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GPR155Q7Z3F1 870 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 LAPTM4BQ86VI4 370 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 LCA5Q86VQ0 697 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 AFAP1L2Q8N4X5 818 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 BANPQ8N9N5 519 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 ADAMTS17Q8TE56 1095 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 UTP15Q8TED0 518 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF483Q8TF39 744 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 MMABQ96EY8 250 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SMIM10Q96HG1 83 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 CDK15Q96Q40 435 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SPSB2Q99619 263 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC6A16Q9GZN6 736 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 NOL11Q9H8H0 719 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 IPPKQ9H8X2 491 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF225Q9UK10 706 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 RNF11Q9Y3C5 154 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 TNPO3Q9Y5L0 923 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 PCM1Q15154 2024 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 VSTM2BA6NLU5 285 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 SGK494L7N484 410 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 TXNDC9O14530 226 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 CTIFO43310 598 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 GLRA3O75311 464 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 JRKO75564 520 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 RAB8AP61006 207 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 CDC20Q12834 499 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 LINC00303Q3SY05 128 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 VWA2Q5GFL6 755 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 PRMT9Q6P2P2 845 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 SRRM1Q8IYB3 904 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 LAS2Q8IYD9 372 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 RIBC1Q8N443 379 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 AMER2Q8N7J2 671 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 OR5T3Q8NGG3 340 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 TTC9Q92623 222 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 COL26A1Q96A83 441 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 TMEM237Q96Q45 408 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 EFHD1Q9BUP0 239 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 EFCAB11Q9BUY7 163 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 C1QTNF3Q9BXJ4 246 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 DRC3Q9H069 523 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 RHBGQ9H310 441 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 PTRH2Q9Y3E5 179 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC22A7Q9Y694 548 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 PTPRQQ9UMZ3 2332 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 PCSK5Q92824 1860 aa13.48□□□□□ -0.25
SHKBP1-217ENST00000598558 IGLV3-12A0A075B6K2 115 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 A0A0G2JN53 185 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 CDC14CA4D256 554 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 CCDC151A5D8V7 595 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 LRIT2A6NDA9 550 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 OR2W5A6NFC9 320 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF860A6NHJ4 632 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 C9J4A7 227 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 MASP2O00187 686 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 COPEO14579 308 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SPAG7O75391 227 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 RDH16O75452 317 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 KLHL18O94889 574 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SERPINA6P08185 405 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF888P0CJ79 500 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 FBLP22087 321 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ATP5F1P24539 256 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 CXCR2P25025 360 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 PIK3CGP48736 1102 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 PRKAA2P54646 552 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TRAF3Q13114 568 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 DSG2Q14126 1118 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TBR1Q16650 682 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 KRT71Q3SY84 523 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TNFAIP8L3Q5GJ75 292 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TOR1AIP1Q5JTV8 583 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF678Q5SXM1 525 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 GRHL2Q6ISB3 625 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 METTL2BQ6P1Q9 378 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ZYG11AQ6WRX3 759 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 UBE3DQ7Z6J8 389 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SYVN1Q86TM6 617 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 PRSS58Q8IYP2 241 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 KRT78Q8N1N4 520 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 L3MBTL4Q8NA19 623 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TRPV3Q8NET8 790 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 OR7G3Q8NG95 312 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 STT3BQ8TCJ2 826 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF473Q8WTR7 871 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 EXTL1Q92935 676 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 FKBP10Q96AY3 582 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 MVB12AQ96EY5 273 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC26A1Q9H2B4 701 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SOX17Q9H6I2 414 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SEMA4BQ9NPR2 832 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC17A7Q9P2U7 560 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 TMCO1Q9UM00 188 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 PLLPQ9Y342 182 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 NAALAD2Q9Y3Q0 740 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 ANGPTL3Q9Y5C1 460 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 HEATR5BQ9P2D3 2071 aa13.47□□□□□ -0.25
SHKBP1-217ENST00000598558 FER1L5A0AVI2 2057 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 GALR3O60755 368 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms