RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 C9orf43Q8TAL5 461 aaPredicted RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 UBLCP1Q8WVY7 318 aaPredicted RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 MTBPQ96DY7 904 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 ABHD17AQ96GS6 310 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SCYL1Q96KG9 808 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 CRB3Q9BUF7 120 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SLC25A18Q9H1K4 315 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 EHD1Q9H4M9 534 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 MKKSQ9NPJ1 570 aaPredicted RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 SEMA3GQ9NS98 782 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 C14orf105Q9NVL8 296 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 P4HTMQ9NXG6 502 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 CPSF2Q9P2I0 782 aaKnown RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 PSMC3IPQ9P2W1 217 aaPredicted RBP13.14□□□□□ -0.31
UPF1-205ENST00000598209 OPTCQ9UBM4 332 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 FETUBQ9UGM5 382 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 SLC22A7Q9Y694 548 aa13.14□□□□□ -0.31
UPF1-205ENST00000598209 IQANK1A0A1B0GTG1 560 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 K7EPI3 171 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 SGK494L7N484 410 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 KLK8O60259 260 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 KLHL18O94889 574 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 IGHEP01854 428 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 RBP1P09455 135 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 CCL11P51671 97 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 ALDH18A1P54886 795 aaKnown RBP13.13□□□□□ -0.31
UPF1-205ENST00000598209 C19orf57Q0VDD7 668 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 NFATC3Q12968 1075 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 CHIT1Q13231 466 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 DOC2AQ14183 400 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 HERC3Q15034 1050 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 RBBP7Q16576 425 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 PFKFB4Q16877 469 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 TMIGD1Q6UXZ0 262 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 TIFABQ6ZNK6 161 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 LAPTM4BQ86VI4 370 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 PDSS2Q86YH6 399 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 AFAP1L2Q8N4X5 818 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 TTLQ8NG68 377 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 CREB3L4Q8TEY5 395 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 NACC2Q96BF6 587 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 WDR34Q96EX3 536 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 PTCD3Q96EY7 689 aaKnown RBP13.13□□□□□ -0.31
UPF1-205ENST00000598209 FER1L6-AS2Q96M78 137 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 CCDC77Q9BR77 488 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 TGIF2Q9GZN2 237 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 SLC6A16Q9GZN6 736 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 PITHD1Q9GZP4 211 aaPredicted RBP13.13□□□□□ -0.31
UPF1-205ENST00000598209 NT5DC2Q9H857 520 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 HCN3Q9P1Z3 774 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 COPG2Q9UBF2 871 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 C3orf18Q9UK00 162 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 NAALAD2Q9Y3Q0 740 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 HS3ST3B1Q9Y662 390 aa13.13□□□□□ -0.31
UPF1-205ENST00000598209 URADA6NGE7 173 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 AGPSO00116 658 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 SOCS6O14544 535 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 RDH16O75452 317 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 SHBGP04278 402 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 SERPINA6P08185 405 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 ZNF888P0CJ79 500 aaPredicted RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 ALOX12P18054 663 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 CD22P20273 847 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 GSTM2P28161 218 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 HNF4AP41235 474 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 EMP2P54851 167 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 VSNL1P62760 191 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 IRF8Q02556 426 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 HYAL2Q12891 473 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 LAPTM5Q13571 262 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 NAA30Q147X3 362 aaPredicted RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 TBCCQ15814 346 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 LACTB2Q53H82 288 aaPredicted RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 TOR1AIP1Q5JTV8 583 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 DCAF10Q5QP82 559 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 ABHD13Q7L211 337 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 ZC3H7AQ8IWR0 971 aaKnown RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 TEX9Q8N6V9 391 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 OR51Q1Q8NH59 317 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 UTP15Q8TED0 518 aaKnown RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 CCT6BQ92526 530 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 EFCAB11Q9BUY7 163 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 ZNF71Q9NQZ8 489 aaPredicted RBP13.12□□□□□ -0.31
UPF1-205ENST00000598209 XPR1Q9UBH6 696 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 TP53TG5Q9Y2B4 290 aa13.12□□□□□ -0.31
UPF1-205ENST00000598209 SMG1Q96Q15 3661 aaKnown RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 ZNF860A6NHJ4 632 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 ANKDD1BA6NHY2 528 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 LRRC14BA6NHZ5 514 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 IDSB3KWA1 339 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 MASP2O00187 686 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 GALR3O60755 368 aaPredicted RBP13.11□□□□□ -0.31
UPF1-205ENST00000598209 BMP10O95393 424 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 B3GALT4O96024 378 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 HEXBP07686 556 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 EPB42P16452 691 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 CASP2P42575 452 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 SKP1P63208 163 aa13.11□□□□□ -0.31
UPF1-205ENST00000598209 PCBP2Q15366 365 aaKnown RBP eCLIP13.11□□□□□ -0.31
UPF1-205ENST00000598209 DEFB134Q4QY38 66 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms