RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 SRPK3Q9UPE1 567 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 RUVBL1Q9Y265 456 aaKnown RBP12.99□□□□□ -0.33
VMP1-210ENST00000589823 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.99□□□□□ -0.33
VMP1-210ENST00000589823 FIS1Q9Y3D6 152 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 RAP2CQ9Y3L5 183 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 TRAF6Q9Y4K3 522 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 NEUROG3Q9Y4Z2 214 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 PCDHB3Q9Y5E6 796 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 PCDHGA3Q9Y5H0 932 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 B3GALT1Q9Y5Z6 326 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 AK5Q9Y6K8 562 aa12.99□□□□□ -0.33
VMP1-210ENST00000589823 HYKKA2RU49 373 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 H3BMH7 237 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 P2RX6O15547 441 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 SNNO75324 88 aaPredicted RBP12.98□□□□□ -0.33
VMP1-210ENST00000589823 TGFB1P01137 390 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 PDYNP01213 254 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 FGF4P08620 206 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 NEK2P51955 445 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 EMP3P54852 163 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 FOXA1P55317 472 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ZNF33BQ06732 778 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 CAMK2BQ13554 666 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 RTP5Q14D33 572 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 MUM1Q2TAK8 710 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 TOR1AIP1Q5JTV8 583 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 YOD1Q5VVQ6 348 aaPredicted RBP12.98□□□□□ -0.33
VMP1-210ENST00000589823 CLEC6AQ6EIG7 209 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ADNP2Q6IQ32 1131 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 IGF2-ASQ6U949 168 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 CHSY3Q70JA7 882 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 VN1R5Q7Z5H4 357 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 CLIP3Q96DZ5 547 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 SLC46A1Q96NT5 459 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 MACROD1Q9BQ69 325 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ULBP3Q9BZM4 244 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 SLC6A16Q9GZN6 736 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 C20orf27Q9GZN8 174 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ZNF395Q9H8N7 513 aaPredicted RBP12.98□□□□□ -0.33
VMP1-210ENST00000589823 ACTR5Q9H9F9 607 aaPredicted RBP12.98□□□□□ -0.33
VMP1-210ENST00000589823 TNFRSF12AQ9NP84 129 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 DMRT3Q9NQL9 472 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ENAMQ9NRM1 1142 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 CUTCQ9NTM9 273 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 PSD3Q9NYI0 1048 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 ZDHHC2Q9UIJ5 367 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 WASF3Q9UPY6 502 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 MSRB2Q9Y3D2 182 aa12.98□□□□□ -0.33
VMP1-210ENST00000589823 TRABD2BA6NFA1 517 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 MAGEB17A8MXT2 336 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 C9orf172C9J069 976 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 NVLO15381 856 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 CPNE3O75131 537 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 KIAA0754O94854 1291 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 TIAF1O95411 115 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 HSD3B1P14060 373 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 ALAS2P22557 587 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 PTX3P26022 381 aaPredicted RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 HSD3B2P26439 372 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 SERPINB3P29508 390 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 HTR6P50406 440 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 RPL14P50914 215 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 RAP1GDS1P52306 607 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 RPS13P62277 151 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 OCRLQ01968 901 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 TGM3Q08188 693 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 CSTF3Q12996 717 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 IMPG1Q17R60 797 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 TMEM35AQ53FP2 167 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 TCHHL1Q5QJ38 904 aaPredicted RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 PRAMEF17Q5VTA0 474 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 KANK2Q63ZY3 851 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 TMEM214Q6NUQ4 689 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 TTLL10Q6ZVT0 673 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 ABHD13Q7L211 337 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 CRLF3Q8IUI8 442 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 RNF175Q8N4F7 328 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 ZNF781Q8N8C0 355 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 GBP7Q8N8V2 638 aaPredicted RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 KCT2Q8NC54 265 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 SRFBP1Q8NEF9 429 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 ZCCHC10Q8TBK6 192 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 PMEPA1Q969W9 287 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 SORT1Q99523 831 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 SERPINI1Q99574 410 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 MS4A8Q9BY19 250 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 REXO4Q9GZR2 422 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 BRF2Q9HAW0 419 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 PFDN4Q9NQP4 134 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 THSD1Q9NS62 852 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 FARSBQ9NSD9 589 aaKnown RBP12.97□□□□□ -0.33
VMP1-210ENST00000589823 NMRK1Q9NWW6 199 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 NDOR1Q9UHB4 597 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 PCDHGA7Q9Y5G6 932 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 DCHS1Q96JQ0 3298 aa12.97□□□□□ -0.33
VMP1-210ENST00000589823 SPTBN4Q9H254 2564 aa12.96□□□□□ -0.33
VMP1-210ENST00000589823 A0A088AWK7 358 aa12.96□□□□□ -0.33
VMP1-210ENST00000589823 LRIT2A6NDA9 550 aa12.96□□□□□ -0.33
VMP1-210ENST00000589823 TMEM233B4DJY2 109 aa12.96□□□□□ -0.33
VMP1-210ENST00000589823 DSCR3O14972 297 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms