RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MYBL2P10244 700 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 FRG1Q14331 258 aaKnown RBP19.32■□□□□ 0.68
SHMT1-209ENST00000582653 INAQ16352 499 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 SBSNQ6UWP8 590 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 CAPN12Q6ZSI9 719 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 ZC3HC1Q86WB0 502 aaKnown RBP19.32■□□□□ 0.68
SHMT1-209ENST00000582653 PDLIM5Q96HC4 596 aaKnown RBP19.32■□□□□ 0.68
SHMT1-209ENST00000582653 TSNARE1Q96NA8 513 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 RBCK1Q9BYM8 510 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.32■□□□□ 0.68
SHMT1-209ENST00000582653 SPNS1Q9H2V7 528 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 MOCS1Q9NZB8 636 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 SCN3AQ9NY46 2000 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 FAM95CA0A1B0GW59 222 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 E7ESA3 106 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 NDUFS4O43181 175 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 SERPIND1P05546 499 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 ENO2P09104 434 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 SLC35G6P0C7Q6 338 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF37AP17032 561 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 ZRSR2Q15696 482 aaKnown RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 PPP1R3AQ16821 1122 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 ABHD17BQ5VST6 288 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 CPEB2Q7Z5Q1 589 aaKnown RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 OR5T3Q8NGG3 340 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 ATL1Q8WXF7 558 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 NR4A3Q92570 626 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 NEIL2Q969S2 332 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 PEX11GQ96HA9 241 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 MAGEB10Q96LZ2 347 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 SMYD2Q9NRG4 433 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 C19orf25Q9UFG5 118 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-209ENST00000582653 TEKT2Q9UIF3 430 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 SLC22A7Q9Y694 548 aa19.31■□□□□ 0.68
SHMT1-209ENST00000582653 CELSR2Q9HCU4 2923 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 TRBC2A0A5B9 178 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 CTAGE15A4D2H0 777 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 NPEPPSL1A6NEC2 478 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 TDGF1P3P51864 188 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 TAS2R39P59534 338 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 CSHL1Q14406 222 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 H3F3CQ6NXT2 135 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 ANKRD37Q7Z713 158 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 CTAGE6Q86UF2 777 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 CEP97Q8IW35 865 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 ZBED8Q8IZ13 594 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 SLC34A3Q8N130 599 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 DNAJB8Q8NHS0 232 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 SUN3Q8TAQ9 357 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 ANKRD49Q8WVL7 239 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 SLC5A11Q8WWX8 675 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 ANP32BQ92688 251 aaKnown RBP19.3■□□□□ 0.68
SHMT1-209ENST00000582653 RELTQ969Z4 430 aa19.3■□□□□ 0.68
SHMT1-209ENST00000582653 NOTCH2Q04721 2471 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 OR5H15A6NDH6 313 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 A8MUI8 341 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 CDC123O75794 336 aaPredicted RBP19.29■□□□□ 0.68
SHMT1-209ENST00000582653 RASAL1O95294 804 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 OLR1P78380 273 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 BTBD16Q32M84 506 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 PLAG1Q6DJT9 500 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 THOC6Q86W42 341 aaKnown RBP19.29■□□□□ 0.68
SHMT1-209ENST00000582653 NKAPQ8N5F7 415 aaKnown RBP19.29■□□□□ 0.68
SHMT1-209ENST00000582653 PLPP5Q8NEB5 264 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 SARGQ9BW04 601 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 UNKQ9C0B0 810 aaKnown RBP19.29■□□□□ 0.68
SHMT1-209ENST00000582653 DPH5Q9H2P9 285 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 ABI3Q9P2A4 366 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 RNF14Q9UBS8 474 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 SLC22A14Q9Y267 594 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 CRYBG3Q68DQ2 2970 aa19.29■□□□□ 0.68
SHMT1-209ENST00000582653 CRYABP02511 175 aaKnown RBP19.28■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF888P0CJ79 500 aaPredicted RBP19.28■□□□□ 0.68
SHMT1-209ENST00000582653 IL10P22301 178 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 SSTR1P30872 391 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 SCTRP47872 440 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 AGTR2P50052 363 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 SRSF11Q05519 484 aaKnown RBP19.28■□□□□ 0.68
SHMT1-209ENST00000582653 PWP1Q13610 501 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 HERC3Q15034 1050 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 C18orf21Q32NC0 220 aaPredicted RBP19.28■□□□□ 0.68
SHMT1-209ENST00000582653 DEFB134Q4QY38 66 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 FCRLBQ6BAA4 426 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 AFAP1L2Q8N4X5 818 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 ANKRD53Q8N9V6 530 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF354BQ96LW1 612 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 EGFL8Q99944 293 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 LANCL2Q9NS86 450 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 DYRK1BQ9Y463 629 aa19.28■□□□□ 0.68
SHMT1-209ENST00000582653 CACNA1DQ01668 2161 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 GALR3O60755 368 aaPredicted RBP19.27■□□□□ 0.68
SHMT1-209ENST00000582653 PRAMEF2O60811 474 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 ZG16O60844 167 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 HNF4AP41235 474 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 ST13P50502 369 aaKnown RBP19.27■□□□□ 0.68
SHMT1-209ENST00000582653 RHAGQ02094 409 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF33BQ06732 778 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 TSNQ15631 228 aaKnown RBP19.27■□□□□ 0.68
SHMT1-209ENST00000582653 FJX1Q86VR8 437 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 SPATA6LQ8N4H0 392 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms