RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MYEOVQ96EZ4 313 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 GRAMD2BQ96HH9 432 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 CDKN2AIPNLQ96HQ2 116 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 TCEANC2Q96MN5 208 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 MTG1Q9BT17 334 aaPredicted RBP5.5□□□□□ -1.53
VPS53-219ENST00000576019 TMEM9BQ9NQ34 198 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 PPANQ9NQ55 473 aaKnown RBP5.5□□□□□ -1.53
VPS53-219ENST00000576019 SERINC1Q9NRX5 453 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 OSER1Q9NX31 292 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 UBQLN2Q9UHD9 624 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 PTBP2Q9UKA9 531 aaKnown RBP5.5□□□□□ -1.53
VPS53-219ENST00000576019 PLA2G4CQ9UP65 541 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 DUSP10Q9Y6W6 482 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 U3KQV3 271 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 DOCK8Q8NF50 2099 aa5.5□□□□□ -1.53
VPS53-219ENST00000576019 EME2A4GXA9 379 aaPredicted RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 ERICH4A6NGS2 130 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 TEX28O15482 410 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PLAUP00749 431 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PCCBP05166 539 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PSMA5P28066 241 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 TACR3P29371 465 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 AKT2P31751 481 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PIGAP37287 484 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 NPBWR1P48145 328 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 LHX1P48742 406 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 DHPSP49366 369 aaPredicted RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 HNRNPFP52597 415 aaKnown RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 METAP1P53582 386 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PPP1R8Q12972 351 aaKnown RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 CUL2Q13617 745 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 BTG3Q14201 252 aaPredicted RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 GLIPR1L2Q4G1C9 344 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 LDLRAP1Q5SW96 308 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 LRRC38Q5VT99 294 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 ZDHHC20Q5W0Z9 365 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 METTL2BQ6P1Q9 378 aaKnown RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 SLC36A4Q6YBV0 504 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 TAF8Q7Z7C8 310 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PIP4P1Q86T03 277 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 GPR180Q86V85 440 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 NUDT13Q86X67 352 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 SFTPA2Q8IWL1 248 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 KLHDC8AQ8IYD2 350 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 SLC25A41Q8N5S1 370 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 AMER3Q8N944 861 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 FIG4Q92562 907 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 SYN2Q92777 582 aaPredicted RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 OTULINQ96BN8 352 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 C16orf58Q96GQ5 468 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 METTL2AQ96IZ6 378 aaKnown RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 KCNN2Q9H2S1 579 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 MOV10Q9HCE1 1003 aaKnown RBP5.49□□□□□ -1.53
VPS53-219ENST00000576019 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.49□□□□□ -1.531e-7■□□□□ 10.9
VPS53-219ENST00000576019 NMRK1Q9NWW6 199 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 NDUFA13Q9P0J0 144 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 TSPAN16Q9UKR8 245 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 SNX6Q9UNH7 406 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 PCSK5Q92824 1860 aa5.49□□□□□ -1.53
VPS53-219ENST00000576019 IL16Q14005 1332 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 PARP14Q460N5 1801 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 PTPRBP23467 1997 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 CENPVL1A0A0U1RR11 272 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 DPPA5A6NC42 116 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 BOLA2-SMG1P6H3BVE0 249 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 PLK4O00444 970 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 E2F3O00716 465 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 TO15178 435 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 INPPL1O15357 1258 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 FLRT2O43155 660 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 SSX5O60225 188 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 UGDHO60701 494 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 CYTIPO60759 359 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 PRAF2O60831 178 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 N4BP1O75113 896 aaKnown RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 ATG13O75143 517 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MTX2O75431 263 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 LCKP06239 509 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 OR2T7P0C7T2 308 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 EGR2P11161 476 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 MAOAP21397 527 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 HNRNPA2B1P22626 353 aaKnown RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 COMPP49747 757 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 NUDT6P53370 316 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MTTPP55157 894 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 GSDMDP57764 484 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 LINC00310P59036 64 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 DLK1P80370 383 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 GBE1Q04446 702 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 COX10Q12887 443 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 GRIK2Q13002 908 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 IL24Q13007 206 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MAD2L1Q13257 205 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 NR1D2Q14995 579 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 MLF2Q15773 248 aaPredicted RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 CTU2Q2VPK5 515 aaKnown RBP5.48□□□□□ -1.53
VPS53-219ENST00000576019 FAM174BQ3ZCQ3 159 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 STXBP5Q5T5C0 1151 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 SULT1C3Q6IMI6 304 aa5.48□□□□□ -1.53
VPS53-219ENST00000576019 PRR27Q6MZM9 219 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms