RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ERVK-11Q9UQG0 969 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 TRBV5-4A0A0C4DH59 114 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 C2orf81A6NN90 581 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 PTPN3P26045 913 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 ACRV1P26436 265 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 COMPP49747 757 aaPredicted RBP14.96□□□□□ -0.01
VPS53-218ENST00000575207 NDUFA9Q16795 377 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 TMEM249Q2WGJ8 235 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 GPR33Q49SQ1 333 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 SYTL3Q4VX76 610 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 SUSD1Q6UWL2 747 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 PQLC3Q8N755 202 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 ZNF441Q8N8Z8 693 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 NFAM1Q8NET5 270 aaPredicted RBP14.96□□□□□ -0.01
VPS53-218ENST00000575207 HMGCLL1Q8TB92 370 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 MRGPRX2Q96LB1 330 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 ZDHHC9Q9Y397 364 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 ATP6V1DQ9Y5K8 247 aa14.96□□□□□ -0.01
VPS53-218ENST00000575207 EML6Q6ZMW3 1958 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 MBD3L3A6NE82 208 aaPredicted RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 RPN2P04844 631 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 CNR1P21554 472 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 BCL6P41182 706 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 SSR4P51571 173 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 PIGHQ14442 188 aaPredicted RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 TAF1AQ15573 450 aaPredicted RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 TEX44Q53QW1 395 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 ARIH2OSQ8N7S6 290 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 MBD3L2Q8NHZ7 208 aaPredicted RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 SYN2Q92777 582 aaPredicted RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 WFIKKN1Q96NZ8 548 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 MRPL47Q9HD33 250 aaKnown RBP14.95□□□□□ -0.02
VPS53-218ENST00000575207 LANCL2Q9NS86 450 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 HCN3Q9P1Z3 774 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 DOCK7Q96N67 2140 aa14.95□□□□□ -0.02
VPS53-218ENST00000575207 A0A096LNT2 108 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 A0A1W2PPV9 198 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 SAGE2PA6NJ88 616 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 A8MVJ9 347 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 P2RX6O15547 441 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 ERN1O75460 977 aaKnown RBP14.94□□□□□ -0.02
VPS53-218ENST00000575207 CPA2P48052 419 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 CDKN1CP49918 316 aaPredicted RBP14.94□□□□□ -0.02
VPS53-218ENST00000575207 CASP9P55211 416 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 VLDLRP98155 873 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 PRSS41Q7RTY9 318 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 LUZP2Q86TE4 346 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 SLC26A11Q86WA9 606 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 SERPINA9Q86WD7 417 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 RFLNBQ8N5W9 214 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 MCOLN3Q8TDD5 553 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 RERGQ96A58 199 aaPredicted RBP14.94□□□□□ -0.02
VPS53-218ENST00000575207 TEKT5Q96M29 485 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 C19orf43Q9BQ61 176 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 SLCO5A1Q9H2Y9 848 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 HPF1Q9NWY4 346 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 YARS2Q9Y2Z4 477 aaKnown RBP14.94□□□□□ -0.02
VPS53-218ENST00000575207 YLPM1P49750 1951 aaKnown RBP14.94□□□□□ -0.02
VPS53-218ENST00000575207 HEATR5BQ9P2D3 2071 aa14.94□□□□□ -0.02
VPS53-218ENST00000575207 C5orf60A6NFR6 353 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 CD8B2A6NJW9 211 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 G3V3Y1 287 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 FTH1P02794 183 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 IL10P22301 178 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 ACVR1BP36896 505 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 PCYT1AP49585 367 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 TYRO3Q06418 890 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 SQLEQ14534 574 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 MIDNQ504T8 468 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 SLC22A15Q8IZD6 547 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 C3orf56Q8N813 242 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 KCTD6Q8NC69 237 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 APCDD1LQ8NCL9 501 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 NEIL3Q8TAT5 605 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 OR1F2PQ96R84 312 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 KLHL28Q9NXS3 571 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 MYO1AQ9UBC5 1043 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 HEY1Q9Y5J3 304 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 PRSS21Q9Y6M0 314 aa14.93□□□□□ -0.02
VPS53-218ENST00000575207 LRRD1A4D1F6 860 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 OVOL3O00110 214 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 TCF21O43680 179 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 CDC123O75794 336 aaPredicted RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 CDK11BP21127 795 aaKnown RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 CMPK1P30085 196 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 CD68P34810 354 aaPredicted RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 SSR1P43307 286 aaKnown RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 MTTPP55157 894 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 MEF2AQ02078 507 aaPredicted RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 RELAQ04206 551 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 SF3B4Q15427 424 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS53-218ENST00000575207 ZNF611Q8N823 705 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 NIPA2Q8N8Q9 360 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 IPMKQ8NFU5 416 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 OR13C4Q8NGS5 318 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 TRMT61AQ96FX7 289 aaKnown RBP14.92□□□□□ -0.02
VPS53-218ENST00000575207 C1orf159Q96HA4 380 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 ART5Q96L15 291 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 TNFRSF13CQ96RJ3 184 aa14.92□□□□□ -0.02
VPS53-218ENST00000575207 ZNF696Q9H7X3 374 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms