RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 MSANTD2Q6P1R3 559 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 RASSF6Q6ZTQ3 369 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 TMEM173Q86WV6 379 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 FBXL6Q8N531 539 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SIDT2Q8NBJ9 832 aaKnown RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 OR4F6Q8NGB9 312 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 BCL7CQ8WUZ0 217 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 PIH1D2Q8WWB5 315 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SUSD3Q96L08 255 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 FCRL2Q96LA5 508 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 HYLS1Q96M11 299 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 OR5M11Q96RB7 305 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 FERD3LQ96RJ6 166 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SEMA3CQ99985 751 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 WACQ9BTA9 647 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SPON2Q9BUD6 331 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 BRINP2Q9C0B6 783 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ANKRA2Q9H9E1 313 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 FBXO10Q9UK96 956 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ANKRD36A6QL64 1941 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 B4DXG7 233 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 GPR182O15218 404 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SUV39H1O43463 412 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PRAMEF1O95521 474 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 RETP07949 1114 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 TRAPPC2P0DI81 140 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 TRAPPC2BP0DI82 140 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MTHFD2P13995 350 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SOX3P41225 446 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 TGM4P49221 684 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 HOXC5Q00444 222 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 NFKB2Q00653 900 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 DDX39BQ13838 428 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PTRHD1Q6GMV3 140 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 LAIR1Q6GTX8 287 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 RANBP10Q6VN20 620 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ADAMTSL2Q86TH1 951 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 CCDC190Q86UF4 302 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 NLRP8Q86W28 1048 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 DNAJA4Q8WW22 397 aaPredicted RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ATOH8Q96SQ7 321 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 FAM129BQ96TA1 746 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 TM9SF2Q99805 663 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SLC25A51Q9H1U9 297 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MAGIXQ9H6Y5 334 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SLC23A1Q9UHI7 598 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 RIMKLBQ9ULI2 386 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 BAIAP2Q9UQB8 552 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PTCH2Q9Y6C5 1203 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 NUP214P35658 2090 aaPredicted RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MOXD2PA6NHM9 499 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ISM1B1AKI9 464 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ARHGAP33O14559 1287 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SCAMP3O14828 347 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 NIPSNAP2O75323 286 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 NRIP1P48552 1158 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 GATMP50440 423 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ERVPABLB-1P60509 514 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 CDH18Q13634 790 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 LETMD1Q6P1Q0 360 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 Q6ZSR9 355 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 KRT74Q7RTS7 529 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 GPR149Q86SP6 731 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 OR10G2Q8NGC3 310 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 RHEBL1Q8TAI7 183 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SMARCD1Q96GM5 515 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 FEVQ99581 238 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SMAD5Q99717 465 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 BTBD2Q9BX70 525 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SPRTNQ9H040 489 aaPredicted RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 B3GNT2Q9NY97 397 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MGAT4AQ9UM21 535 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PRKAB1Q9Y478 270 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PCM1Q15154 2024 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 LEUTXA8MZ59 168 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 CASKO14936 926 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MRPS14O60783 128 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SH3BGRLO75368 114 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PAGE1O75459 146 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PAPSS2O95340 614 aaPredicted RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ZNF250P15622 560 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SLC19A1P41440 591 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 HCAR3P49019 387 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 TUSC3Q13454 348 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MRPL58Q14197 206 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ABRAXAS2Q15018 415 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 UGT8Q16880 541 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ASB18Q6ZVZ8 466 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 GLCCI1Q86VQ1 547 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 SCN4BQ8IWT1 228 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 DNAJC22Q8N4W6 341 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 ATP6V1C2Q8NEY4 427 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 CHAC2Q8WUX2 184 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 RHBDF1Q96CC6 855 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 AARSD1Q9BTE6 412 aaKnown RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PAK6Q9NQU5 681 aaPredicted RBP9.25□□□□□ -0.93
CCDC40-212ENST00000574799 MARCH5Q9NX47 278 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PSORS1C1Q9UIG5 152 aa9.25□□□□□ -0.93
CCDC40-212ENST00000574799 PCTPQ9UKL6 214 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms