RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NIPAL1Q6NVV3 410 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 TMEM207Q6UWW9 146 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 TMPRSS11BQ86T26 416 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 TBC1D1Q86TI0 1168 aaPredicted RBP7.69□□□□□ -1.18
VPS53-214ENST00000572607 ATCAYQ86WG3 371 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 CEP97Q8IW35 865 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 MMGT1Q8N4V1 131 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 CEP112Q8N8E3 955 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 ZCCHC10Q8TBK6 192 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 ANKRD49Q8WVL7 239 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 SLC13A3Q8WWT9 602 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 METTL21AQ8WXB1 218 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 CYTH2Q99418 400 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 AIF1LQ9BQI0 150 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 NUDT9Q9BW91 350 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 CAPS2Q9BXY5 557 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 EPN3Q9H201 632 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 CNOT10Q9H9A5 744 aaKnown RBP7.69□□□□□ -1.18
VPS53-214ENST00000572607 PELI2Q9HAT8 420 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 LRRC4CQ9HCJ2 640 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 C5AR2Q9P296 337 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 FBXL4Q9UKA2 621 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 SLC22A14Q9Y267 594 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 IKBKGQ9Y6K9 419 aa7.69□□□□□ -1.18
VPS53-214ENST00000572607 IGLV3-12A0A075B6K2 115 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 NSG1A0A0A6YYJ2 146 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 TRBC2A0A5B9 178 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 URADA6NGE7 173 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 IDSB3KWA1 339 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 K7EM74 188 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SOCS6O14544 535 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 CLGNO14967 610 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 FOXS1O43638 330 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 H2AFYO75367 372 aaKnown RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 WDR47O94967 919 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MED26O95402 600 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 IL1RNP18510 177 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 GNAZP19086 355 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SLC26A3P40879 764 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 BCL6P41182 706 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 FOXL2P58012 376 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 AP2B1P63010 937 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MEF2AQ02078 507 aaPredicted RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 PWP1Q13610 501 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MYBPC3Q14896 1274 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 HERC3Q15034 1050 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 RBBP5Q15291 538 aaKnown RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 TGFBIQ15582 683 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 TRADDQ15628 312 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 ZKSCAN8Q15776 578 aaPredicted RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 UAP1Q16222 522 aaPredicted RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 MINDY4Q4G0A6 757 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 VWA2Q5GFL6 755 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 CDKL4Q5MAI5 379 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 CATSPEREQ5SY80 951 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 TMEM214Q6NUQ4 689 aaKnown RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 ABHD13Q7L211 337 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 TAOK1Q7L7X3 1001 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 VN1R4Q7Z5H5 301 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 CCDC91Q7Z6B0 441 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 GPSM1Q86YR5 675 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SPATA6LQ8N4H0 392 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 ZADH2Q8N4Q0 377 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 DTWD1Q8N5C7 304 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SNX31Q8N9S9 440 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 TRPV3Q8NET8 790 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 ABHD11Q8NFV4 315 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 OR9A4Q8NGU2 314 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 STAG3L4Q8TBR4 150 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 IFT81Q8WYA0 676 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 EXT2Q93063 718 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 NEIL2Q969S2 332 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MRRFQ96E11 262 aaKnown RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 TSNARE1Q96NA8 513 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 FMO2Q99518 471 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MCMBPQ9BTE3 642 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 UNKQ9C0B0 810 aaKnown RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 EPS8L2Q9H6S3 715 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 NMRAL1Q9HBL8 299 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MLXIPLQ9NP71 852 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SLAMF7Q9NQ25 335 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 GPRC5BQ9NZH0 403 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 CD274Q9NZQ7 290 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 C19orf25Q9UFG5 118 aaPredicted RBP7.68□□□□□ -1.18
VPS53-214ENST00000572607 IKZF3Q9UKT9 509 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 MKL2Q9ULH7 1088 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 RNF112Q9ULX5 631 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SH2B3Q9UQQ2 575 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 HS3ST3B1Q9Y662 390 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 SLC22A7Q9Y694 548 aa7.68□□□□□ -1.18
VPS53-214ENST00000572607 A0A087X1B8 175 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SGK494L7N484 410 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 FFAR3O14843 346 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 GPR42O15529 346 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 STK16O75716 305 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KLHL18O94889 574 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 HPP00738 406 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 PDGFAP04085 211 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 INHBAP08476 426 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 CYC1P08574 325 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms