RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GPATCH11Q8N954 259 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 OR5T3Q8NGG3 340 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 FBXL8Q96CD0 374 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 KCNK13Q9HB14 408 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 MMP25Q9NPA2 562 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 LANCL2Q9NS86 450 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 CORO1CQ9ULV4 474 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 MYO7BQ6PIF6 2116 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 TRBC2A0A5B9 178 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ZNF860A6NHJ4 632 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 GALR3O60755 368 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 UNC5CO95185 931 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 GUCA1CO95843 209 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ENO2P09104 434 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 ACTN3Q08043 901 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 MORF4L2Q15014 288 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ABRAXAS2Q15018 415 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 SFT2D3Q587I9 215 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ZNF766Q5HY98 468 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 CATSPEREQ5SY80 951 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 FAM45BPQ6NSW5 357 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 TRMT10BQ6PF06 316 aaKnown RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 TMEM207Q6UWW9 146 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 STRA8Q7Z7C7 330 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 BEST3Q8N1M1 668 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 FAM45AQ8TCE6 357 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ATL1Q8WXF7 558 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 PDLIM5Q96HC4 596 aaKnown RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 PWWP2AQ96N64 755 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 OLFM1Q99784 485 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 RBCK1Q9BYM8 510 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 TRMT1Q9NXH9 659 aaKnown RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 PCDHGB6Q9Y5F9 930 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 TEX264Q9Y6I9 313 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 MAGEB17A8MXT2 336 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 DNAJB6O75190 326 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 TCP1P17987 556 aaKnown RBP15.13■□□□□ 0.01
CLN3-229ENST00000567963 ALOX12P18054 663 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 TUBA3CQ13748 450 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 CSHL1Q14406 222 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 MEP1AQ16819 746 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 DEFB134Q4QY38 66 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 TUBA3EQ6PEY2 450 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 PAPD4Q6PIY7 484 aaKnown RBP15.13■□□□□ 0.01
CLN3-229ENST00000567963 TICAM1Q8IUC6 712 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 CRLF3Q8IUI8 442 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 TBC1D19Q8N5T2 526 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 NEIL2Q969S2 332 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 TBC1D20Q96BZ9 403 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 LRRC39Q96DD0 335 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 CFAP36Q96G28 342 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 SIGLEC12Q96PQ1 595 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 LPAR4Q99677 370 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 NPAS2Q99743 824 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 WDR83Q9BRX9 315 aaKnown RBP15.13■□□□□ 0.01
CLN3-229ENST00000567963 SEC14L3Q9UDX4 400 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 ZFP69BQ9UJL9 534 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 IKZF3Q9UKT9 509 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 CHMP2BQ9UQN3 213 aa15.13■□□□□ 0.01
CLN3-229ENST00000567963 LRBAP50851 2863 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 CHST10O43529 356 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 WISP2O76076 250 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SERPIND1P05546 499 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 FHP07954 510 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 CD96P40200 585 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SCTRP47872 440 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SKP1P63208 163 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 PMP22Q01453 160 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 USP10Q14694 798 aaKnown RBP15.12■□□□□ 0.01
CLN3-229ENST00000567963 STEAP4Q687X5 459 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SP5Q6BEB4 398 aaPredicted RBP15.12■□□□□ 0.01
CLN3-229ENST00000567963 NIPAL1Q6NVV3 410 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SBSNQ6UWP8 590 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 MDS2Q8NDY4 140 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 NT5CQ8TCD5 201 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SLC5A11Q8WWX8 675 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 TSLPQ969D9 159 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 SPNS1Q9H2V7 528 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 COPG2Q9UBF2 871 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 ENTPD4Q9Y227 616 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 CSMD1Q96PZ7 3565 aa15.12■□□□□ 0.01
CLN3-229ENST00000567963 TRGV8A0A0C4DH27 118 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 MAN1A2O60476 641 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 B3GALT4O96024 378 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 ZNF888P0CJ79 500 aaPredicted RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 AHRP35869 848 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 ST13P50502 369 aaKnown RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 OR4D2P58180 307 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 OLR1P78380 273 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 RGS1Q08116 209 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 FRG1Q14331 258 aaKnown RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 PPP1R3AQ16821 1122 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.11■□□□□ 0.01
CLN3-229ENST00000567963 SPINK14Q6IE38 97 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 SYDE1Q6ZW31 735 aaPredicted RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 ABHD13Q7L211 337 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 UTP15Q8TED0 518 aaKnown RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 UTP23Q9BRU9 249 aaKnown RBP15.11■□□□□ 0.01
CLN3-229ENST00000567963 ANKRD10Q9NXR5 420 aa15.11■□□□□ 0.01
CLN3-229ENST00000567963 CREBBPQ92793 2442 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms