RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C9JVG2 144 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 B4GAT1O43505 415 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 SEMA3DO95025 777 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 RETP07949 1114 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 TIA1P31483 386 aaKnown RBP eCLIP29.2■■■□□ 2.27
CTCF-203ENST00000566078 HNRNPH1P31943 449 aaKnown RBP29.2■■■□□ 2.27
CTCF-203ENST00000566078 RAP1GDS1P52306 607 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 RNF44Q7L0R7 432 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 SPRED1Q7Z699 444 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 WDR48Q8TAF3 677 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 ZDHHC12Q96GR4 267 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 ZFYVE21Q9BQ24 234 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 MACROD1Q9BQ69 325 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 EPHA6Q9UF33 1036 aa29.2■■■□□ 2.27
CTCF-203ENST00000566078 ADAMTS20P59510 1910 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 TLCD2A6NGC4 264 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 SLC9B1P1A6NJY1 282 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 NR5A2O00482 541 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 ANKRD28O15084 1053 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 KIF1CO43896 1103 aaKnown RBP29.2■■■□□ 2.26
CTCF-203ENST00000566078 PCDH7O60245 1069 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 PNLIPP16233 465 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 TACR1P25103 407 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 RELAQ04206 551 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 VN1R4Q7Z5H5 301 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 ASPGQ86U10 573 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 PRSS33Q8NF86 280 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 PROKR1Q8TCW9 393 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 TSSK3Q96PN8 268 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 OR2A5Q96R48 311 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 CENPKQ9BS16 269 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 LRFN3Q9BTN0 628 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 SIRT5Q9NXA8 310 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 AHSPQ9NZD4 102 aa29.2■■■□□ 2.26
CTCF-203ENST00000566078 PLPP1O14494 284 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 HNRNPCL1O60812 293 aaKnown RBP29.19■■■□□ 2.26
CTCF-203ENST00000566078 ZNF883P0CG24 379 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 TCF15Q12870 199 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 SUMF1Q8NBK3 374 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 SLC13A3Q8WWT9 602 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 THAP11Q96EK4 314 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 REXO4Q9GZR2 422 aaKnown RBP29.19■■■□□ 2.26
CTCF-203ENST00000566078 GPR179Q6PRD1 2367 aa29.19■■■□□ 2.26
CTCF-203ENST00000566078 LRIT2A6NDA9 550 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 SNRPB2P08579 225 aaKnown RBP29.18■■■□□ 2.26
CTCF-203ENST00000566078 JAK1P23458 1154 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 HYAL2Q12891 473 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 TOR1AIP1Q5JTV8 583 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 PERM1Q5SV97 790 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 GALNT18Q6P9A2 607 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 FAM9CQ8IZT9 166 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 CD180Q99467 661 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 SORBS1Q9BX66 1292 aaKnown RBP29.18■■■□□ 2.26
CTCF-203ENST00000566078 DPY30Q9C005 99 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 AICDAQ9GZX7 198 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 KLHL3Q9UH77 587 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 BTBD3Q9Y2F9 522 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 SCN3AQ9NY46 2000 aa29.18■■■□□ 2.26
CTCF-203ENST00000566078 EME2A4GXA9 379 aaPredicted RBP29.17■■■□□ 2.26
CTCF-203ENST00000566078 ANXA4P09525 319 aaPredicted RBP29.17■■■□□ 2.26
CTCF-203ENST00000566078 IL12AP29459 219 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 CSF2RBP32927 897 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 SUZ12Q15022 739 aaKnown RBP29.17■■■□□ 2.26
CTCF-203ENST00000566078 FRMPD2BQ6IN97 320 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 CDC26Q8NHZ8 85 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 RGMAQ96B86 450 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 SLC25A23Q9BV35 468 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 KLHL31Q9H511 634 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 COL5A1P20908 1838 aaPredicted RBP29.17■■■□□ 2.26
CTCF-203ENST00000566078 CROCCQ5TZA2 2017 aa29.17■■■□□ 2.26
CTCF-203ENST00000566078 GNG14A0A1W2PPG7 69 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RTCAO00442 366 aaKnown RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 CD1CP29017 333 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 ZFP36L2P47974 494 aaKnown RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 MNAT1P51948 309 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 POLR2JP52435 117 aaKnown RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 DAB2P98082 770 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 PROX2Q3B8N5 592 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 ADPRMQ3LIE5 342 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 TMEM35AQ53FP2 167 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 BLOC1S3Q6QNY0 202 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RIPOR1Q6ZS17 1223 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 PLXDC1Q8IUK5 500 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 NT5CQ8TCD5 201 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 NAT6Q93015 286 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RERGQ96A58 199 aaPredicted RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 SLC7A6OSQ96CW6 309 aaPredicted RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 ZBTB18Q99592 522 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 ACTR5Q9H9F9 607 aaPredicted RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 DNAAF2Q9NVR5 837 aaKnown RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 TMEM45AQ9NWC5 275 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 FAM234BA2RU67 622 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 ANKRD65E5RJM6 399 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 SH3BP5O60239 455 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 GBAP04062 536 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 KLK1P06870 262 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 SLC35G6P0C7Q6 338 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RASSF2P50749 326 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 KCNK10P57789 538 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 MXRA7P84157 204 aa29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms