RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR4K3Q96R72 315 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 HIST1H2AJQ99878 128 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 H2AFJQ9BTM1 129 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 KCNK13Q9HB14 408 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 KLF2Q9Y5W3 355 aaPredicted RBP16.12■□□□□ 0.17
CLN3-216ENST00000565316 PRSS44E7EML9 344 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 GALR3O60755 368 aaPredicted RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 WISP2O76076 250 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 IVDP26440 423 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 TNFRSF8P28908 595 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 CD96P40200 585 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 PMP22Q01453 160 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 SRSF11Q05519 484 aaKnown RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 USP10Q14694 798 aaKnown RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 ABRAXAS2Q15018 415 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 PPP1R7Q15435 360 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 MEP1AQ16819 746 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 FCRLBQ6BAA4 426 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 MTFR2Q6P444 385 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 PAPD4Q6PIY7 484 aaKnown RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 CRLF3Q8IUI8 442 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 LGI4Q8N135 537 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 ZNF740Q8NDX6 193 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 OR5T3Q8NGG3 340 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 TSLPQ969D9 159 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 ALKBH8Q96BT7 664 aaKnown RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 PYCR2Q96C36 320 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 FBXL8Q96CD0 374 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 MOCOSQ96EN8 888 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 CERS2Q96G23 380 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 PEX11GQ96HA9 241 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 CCDC120Q96HB5 630 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 ARL15Q9NXU5 204 aa16.11■□□□□ 0.17
CLN3-216ENST00000565316 SUCOQ9UBS9 1254 aaKnown RBP16.11■□□□□ 0.17
CLN3-216ENST00000565316 PDZD2O15018 2839 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 DCHS2Q6V1P9 2916 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 TRGV8A0A0C4DH27 118 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 TRBC2A0A5B9 178 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ARHGAP10A1A4S6 786 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ASPDHA6ND91 283 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ZNF860A6NHJ4 632 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 CDK2AP1O14519 115 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 NDUFS4O43181 175 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 OR1F1O43749 312 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 FHP07954 510 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ALOX12P18054 663 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 MEF2AQ02078 507 aaPredicted RBP16.1■□□□□ 0.17
CLN3-216ENST00000565316 RBPJQ06330 500 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 TEDDM1Q5T9Z0 273 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 SLC35F6Q8N357 371 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 NT5CQ8TCD5 201 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ATL1Q8WXF7 558 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 TBC1D20Q96BZ9 403 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 SCMH1Q96GD3 660 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 PDLIM5Q96HC4 596 aaKnown RBP16.1■□□□□ 0.17
CLN3-216ENST00000565316 SIGLEC12Q96PQ1 595 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 LPAR4Q99677 370 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 UTP23Q9BRU9 249 aaKnown RBP16.1■□□□□ 0.17
CLN3-216ENST00000565316 SLC17A6Q9P2U8 582 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 ASIC3Q9UHC3 531 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 CORO1CQ9ULV4 474 aaPredicted RBP16.1■□□□□ 0.17
CLN3-216ENST00000565316 SNX12Q9UMY4 172 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 VWA7Q9Y334 891 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 SCN3AQ9NY46 2000 aa16.1■□□□□ 0.17
CLN3-216ENST00000565316 CCL21O00585 134 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 TTI1O43156 1089 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 MAN1A2O60476 641 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 DNAJB6O75190 326 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 CDC123O75794 336 aaPredicted RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 ENO2P09104 434 aaPredicted RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 SCTRP47872 440 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 PGGT1BP53609 377 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 SKP1P63208 163 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 ACTN3Q08043 901 aaPredicted RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 PDAP1Q13442 181 aaKnown RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 OR1C1Q15619 314 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 HECTD2Q5U5R9 776 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 NIPAL1Q6NVV3 410 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 RPTNQ6XPR3 784 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 ZNF808Q8N4W9 903 aaPredicted RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 SLC5A8Q8N695 610 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 ELP5Q8TE02 316 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 THAP3Q8WTV1 239 aaPredicted RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 RBCK1Q9BYM8 510 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 TRIM54Q9BYV2 358 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 UNKQ9C0B0 810 aaKnown RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 CLK4Q9HAZ1 481 aaKnown RBP16.09■□□□□ 0.17
CLN3-216ENST00000565316 ZFP69BQ9UJL9 534 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 ZNF835Q9Y2P0 537 aa16.09■□□□□ 0.17
CLN3-216ENST00000565316 CHST10O43529 356 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 SLC19A2O60779 497 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 GRNP28799 593 aaKnown RBP16.08■□□□□ 0.16
CLN3-216ENST00000565316 AHRP35869 848 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 OR4D2P58180 307 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 SLC26A5P58743 744 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 FRG1Q14331 258 aaKnown RBP16.08■□□□□ 0.16
CLN3-216ENST00000565316 BBS9Q3SYG4 887 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 DEFB134Q4QY38 66 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 KRTCAP3Q53RY4 240 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 CATSPEREQ5SY80 951 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms