RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ALPPP05187 535 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SERPIND1P05546 499 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 HEXBP07686 556 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 ABHD2P08910 425 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 IL10P22301 178 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 GDF5P43026 501 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 HSPA7P48741 367 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SOX8P57073 446 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 LAPTM5Q13571 262 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 RBBP5Q15291 538 aaKnown RBP12.7□□□□□ -0.38
CLK3-216ENST00000564468 PDK4Q16654 411 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 TUBB8Q3ZCM7 444 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 VWA2Q5GFL6 755 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 ATG9BQ674R7 924 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SHISA6Q6ZSJ9 500 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 ABHD13Q7L211 337 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 LRRC70Q7Z2Q7 622 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 PTRH1Q86Y79 214 aaKnown RBP12.7□□□□□ -0.38
CLK3-216ENST00000564468 PRSS58Q8IYP2 241 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 GALNT16Q8N428 558 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 AMER3Q8N944 861 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 SNX31Q8N9S9 440 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 KCT2Q8NC54 265 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 OR9A4Q8NGU2 314 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 ZCCHC10Q8TBK6 192 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 EXT2Q93063 718 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 NXNL1Q96CM4 212 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 ATOH8Q96SQ7 321 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 TMEM79Q9BSE2 394 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 CD244Q9BZW8 370 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 NT5DC2Q9H857 520 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 L2HGDHQ9H9P8 463 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 CLK4Q9HAZ1 481 aaKnown RBP12.7□□□□□ -0.38
CLK3-216ENST00000564468 MLXIPLQ9NP71 852 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 IGSF5Q9NSI5 407 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 C5AR2Q9P296 337 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 HS3ST3B1Q9Y662 390 aa12.7□□□□□ -0.38
CLK3-216ENST00000564468 TEX15Q9BXT5 2789 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 EXOC1LA0A1B0GW35 172 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 HMX2A2RU54 273 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 A6NL46 340 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 IDSB3KWA1 339 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 SOCS6O14544 535 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 CCNT2O60583 730 aaKnown RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 DPM1O60762 260 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 STATHP02808 62 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 SERPINA6P08185 405 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 ACPPP15309 386 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 ALOX12P18054 663 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 IL1RNP18510 177 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 STXBP1P61764 594 aaKnown RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 DLG1Q12959 904 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 MYBPC3Q14896 1274 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 HIST2H2ACQ16777 129 aaPredicted RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 C18orf21Q32NC0 220 aaPredicted RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 PAGE2BQ5JRK9 111 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 VWA5B1Q5TIE3 1220 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 HIST2H2AA3Q6FI13 130 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 KIRREL2Q6UWL6 708 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 TMIGD1Q6UXZ0 262 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 SLCO4C1Q6ZQN7 724 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 CENPLQ8N0S6 344 aaPredicted RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 ZNF740Q8NDX6 193 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 FDCSPQ8NFU4 85 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 OR51Q1Q8NH59 317 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 KCTD4Q8WVF5 259 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 METTL21AQ8WXB1 218 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 PTCD3Q96EY7 689 aaKnown RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 MACROD1Q9BQ69 325 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 EFCAB11Q9BUY7 163 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 VPS11Q9H270 941 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 OPTCQ9UBM4 332 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 FBXL4Q9UKA2 621 aa12.69□□□□□ -0.38
CLK3-216ENST00000564468 MRPS2Q9Y399 296 aaKnown RBP12.69□□□□□ -0.38
CLK3-216ENST00000564468 NOTCH2Q04721 2471 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 PCSK5Q92824 1860 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ANKDD1BA6NHY2 528 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 K7EPI3 171 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SGK494L7N484 410 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 KLHL18O94889 574 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 BMP10O95393 424 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 HPP00738 406 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ALDOAP04075 364 aaKnown RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 SNRPAP09012 282 aaKnown RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 RBP1P09455 135 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 COL6A2P12110 1019 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ITGA3P26006 1051 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 VARSP26640 1264 aaKnown RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 CASRP41180 1078 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 FOXL2P58012 376 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 AP2B1P63010 937 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SLBPQ14493 270 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLK3-216ENST00000564468 TSNAXIP1Q2TAA8 658 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 XKR6Q5GH73 641 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ZC3H7AQ8IWR0 971 aaKnown RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 AFAP1L2Q8N4X5 818 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ANKRD53Q8N9V6 530 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 OR11G2Q8NGC1 345 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 UBTD2Q8WUN7 234 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms