RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CCR8P51685 355 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 RHAGQ02094 409 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 TSNQ15631 228 aaKnown RBP16.73■□□□□ 0.27
HDDC3-205ENST00000559898 THOC6Q86W42 341 aaKnown RBP16.73■□□□□ 0.27
HDDC3-205ENST00000559898 AFAP1L2Q8N4X5 818 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 CAMKVQ8NCB2 501 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 THAP11Q96EK4 314 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 PDLIM5Q96HC4 596 aaKnown RBP16.73■□□□□ 0.27
HDDC3-205ENST00000559898 LMF1Q96S06 567 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 ANKHQ9HCJ1 492 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 SAYSD1Q9NPB0 183 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 CORO1CQ9ULV4 474 aaPredicted RBP16.73■□□□□ 0.27
HDDC3-205ENST00000559898 SLC22A14Q9Y267 594 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.73■□□□□ 0.27
HDDC3-205ENST00000559898 SVILO95425 2214 aa16.73■□□□□ 0.27
HDDC3-205ENST00000559898 TRBC2A0A5B9 178 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 KLHL41O60662 606 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 FAM155BO75949 473 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 LDLRP01130 860 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 CCND1P24385 295 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 SCTRP47872 440 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 AP1S2P56377 157 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 GPX6P59796 221 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 ARG2P78540 354 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 REEP5Q00765 189 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 DEFB134Q4QY38 66 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 CPEB2Q7Z5Q1 589 aaKnown RBP16.72■□□□□ 0.27
HDDC3-205ENST00000559898 SPATA4Q8NEY3 305 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 GABPB2Q8TAK5 448 aaPredicted RBP16.72■□□□□ 0.27
HDDC3-205ENST00000559898 SLC5A11Q8WWX8 675 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 ESAMQ96AP7 390 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 VPS39Q96JC1 886 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 MAGEB10Q96LZ2 347 aaPredicted RBP16.72■□□□□ 0.27
HDDC3-205ENST00000559898 RUNDC3BQ96NL0 473 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 HAUS8Q9BT25 410 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 SARGQ9BW04 601 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 RIC8BQ9NVN3 520 aa16.72■□□□□ 0.27
HDDC3-205ENST00000559898 NCF1BA6NI72 391 aaPredicted RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 NCF1CA8MVU1 366 aaPredicted RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 FAM227AF5H4B4 570 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 PHGDHO43175 533 aaKnown RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 GALR3O60755 368 aaPredicted RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 PRAMEF4O60810 478 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 WFS1O76024 890 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 NCF1P14598 390 aaPredicted RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 TNFSF10P50591 281 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 RAB8AP61006 207 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 BTG2P78543 158 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 PMP22Q01453 160 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 TLR1Q15399 786 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 PRAMEF9Q5VWM5 478 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 ADNP2Q6IQ32 1131 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 TMPRSS11BQ86T26 416 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 UTP15Q8TED0 518 aaKnown RBP16.71■□□□□ 0.27
HDDC3-205ENST00000559898 FAR1Q8WVX9 515 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 ERP44Q9BS26 406 aa16.71■□□□□ 0.27
HDDC3-205ENST00000559898 SPTBN1Q01082 2364 aaKnown RBP16.7■□□□□ 0.26
HDDC3-205ENST00000559898 A0A0G2JN53 185 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 WIPF3A6NGB9 483 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 A8MUI8 341 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 TAPBPO15533 448 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 CHST10O43529 356 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 ENO2P09104 434 aaPredicted RBP16.7■□□□□ 0.26
HDDC3-205ENST00000559898 CBLBQ13191 982 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 CSHL1Q14406 222 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 BTBD16Q32M84 506 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 SFT2D3Q587I9 215 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 UBAP2Q5T6F2 1119 aaKnown RBP16.7■□□□□ 0.26
HDDC3-205ENST00000559898 ZNF324BQ6AW86 544 aaPredicted RBP16.7■□□□□ 0.26
HDDC3-205ENST00000559898 NXPE4Q6UWF7 544 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 ST6GALNAC3Q8NDV1 305 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 NT5CQ8TCD5 201 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 CREB3L4Q8TEY5 395 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 HAS2Q92819 552 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 VPS50Q96JG6 964 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 TMEM79Q9BSE2 394 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 TUBB6Q9BUF5 446 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 HES7Q9BYE0 225 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 TRIM54Q9BYV2 358 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 RHOJQ9H4E5 214 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 OSGIN2Q9Y236 505 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 OARD1Q9Y530 152 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 SLC22A7Q9Y694 548 aa16.7■□□□□ 0.26
HDDC3-205ENST00000559898 B4GALT2O60909 372 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 TBX6O95947 436 aaPredicted RBP16.69■□□□□ 0.26
HDDC3-205ENST00000559898 SLC35G6P0C7Q6 338 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 SMIM10L1P0DMW3 83 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 ALOX12P18054 663 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 GRK3P35626 688 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 SLC6A12P48065 614 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 KCNC1P48547 511 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 TDGF1P3P51864 188 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 KCNK10P57789 538 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 ZNF33BQ06732 778 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 EFTUD2Q15029 972 aaKnown RBP eCLIP16.69■□□□□ 0.26
HDDC3-205ENST00000559898 RBBP5Q15291 538 aaKnown RBP16.69■□□□□ 0.26
HDDC3-205ENST00000559898 OR4D1Q15615 310 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 ZDHHC24Q6UX98 284 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 BEST3Q8N1M1 668 aa16.69■□□□□ 0.26
HDDC3-205ENST00000559898 KIF2BQ8N4N8 673 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms