RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SPNS1Q9H2V7 528 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 RHBGQ9H310 441 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 GSTO2Q9H4Y5 243 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ANKHQ9HCJ1 492 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ZBTB26Q9HCK0 441 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 MED4Q9NPJ6 270 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 RUVBL1Q9Y265 456 aaKnown RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 TPRP12270 2363 aaKnown RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 ACACBO00763 2458 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 TMEM114B3SHH9 223 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 H3BMH7 237 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 MEN1O00255 615 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 P2RX6O15547 441 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 RRP8O43159 456 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 HCRTR1O43613 425 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CHEK2O96017 543 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 NTRK1P04629 796 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 SERPINE1P05121 402 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CD63P08962 238 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 DHRS4L1P0CG22 281 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CD22P20273 847 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ALAS2P22557 587 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 DCDP81605 110 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 ZNF33BQ06732 778 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 DDX39BQ13838 428 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 FAM53BQ14153 422 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 RCN2Q14257 317 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ZRSR2Q15696 482 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 HKDC1Q2TB90 917 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 TMEM35AQ53FP2 167 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 TMEM214Q6NUQ4 689 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 TRIM40Q6P9F5 258 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ZFAND4Q86XD8 727 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CACNA2D3Q8IZS8 1091 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 AFAP1L2Q8N4X5 818 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ARFGAP2Q8N6H7 521 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ANKRD53Q8N9V6 530 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 GALNT6Q8NCL4 622 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 OR7G3Q8NG95 312 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ZCCHC10Q8TBK6 192 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 RAB3IL1Q8TBN0 382 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 METTL6Q8TCB7 284 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 MGARPQ8TDB4 240 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 AGAP11Q8TF27 550 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ZCCHC14Q8WYQ9 949 aaKnown RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 MR1Q95460 341 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 GAL3ST3Q96A11 431 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 TM4SF19Q96DZ7 209 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CMTM7Q96FZ5 175 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 FAR2Q96K12 515 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 CDK15Q96Q40 435 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 MECRQ9BV79 373 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 GATA5Q9BWX5 397 aaPredicted RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 ROGDIQ9GZN7 287 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 COPS7BQ9H9Q2 264 aaPredicted RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 MID1IP1Q9NPA3 183 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 STARD5Q9NSY2 213 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 WDR70Q9NW82 654 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 ZNF446Q9NWS9 450 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 NMRK1Q9NWW6 199 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 GPN3Q9UHW5 284 aaPredicted RBP9.6□□□□□ -0.87
USP3-216ENST00000559873 PADI1Q9ULC6 663 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 PADI2Q9Y2J8 665 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 RNF11Q9Y3C5 154 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 SLC22A7Q9Y694 548 aa9.6□□□□□ -0.87
USP3-216ENST00000559873 WDR91A4D1P6 747 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 C21orf140B9A014 251 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 LCMT2O60294 686 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 PRAMEF4O60810 478 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 OR4F21O95013 312 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 NSA2O95478 260 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 HSPA4LO95757 839 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 CAPN1P07384 714 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 HSD3B1P14060 373 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 ZNF28P17035 718 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 ALOX12P18054 663 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 TSPAN8P19075 237 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 FBLP22087 321 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 HSD3B2P26439 372 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 RORAP35398 523 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 TSFMP43897 325 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 GCGRP47871 477 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 RAP1GDS1P52306 607 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 ARFIP1P53367 373 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 PPP2R2AP63151 447 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 GALNT1Q10472 559 aaPredicted RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 ARHGAP40Q5TG30 622 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 PRAMEF9Q5VWM5 478 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 ATG16L1Q676U5 607 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 LRRC69Q6ZNQ3 347 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 CHSY3Q70JA7 882 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 SYVN1Q86TM6 617 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 CUZD1Q86UP6 607 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 DSELQ8IZU8 1212 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 CDYL2Q8N8U2 506 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 HUS1BQ8NHY5 278 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 CREB3L4Q8TEY5 395 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 ZNF473Q8WTR7 871 aaKnown RBP9.59□□□□□ -0.87
USP3-216ENST00000559873 DYDC1Q8WWB3 177 aa9.59□□□□□ -0.87
USP3-216ENST00000559873 SELENOMQ8WWX9 145 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms