RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NXPE4Q6UWF7 544 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 SERPINA11Q86U17 422 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 ADHFE1Q8IWW8 467 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 EID3Q8N140 333 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 HM13Q8TCT9 377 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 HSH2DQ96JZ2 352 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 PRAP1Q96NZ9 151 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 MACROD1Q9BQ69 325 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 SGPP1Q9BX95 441 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 NAA50Q9GZZ1 169 aaKnown RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 POLR1BQ9H9Y6 1135 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 GPATCH2Q9NW75 528 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 THAP10Q9P2Z0 257 aaPredicted RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 PNMA8BQ9ULN7 279 aaPredicted RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 PADI4Q9UM07 663 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 KCNK6Q9Y257 313 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 PCDHB11Q9Y5F2 797 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 NPIPB8E9PQR5 432 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 FOXD2O60548 495 aaPredicted RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 FGL2Q14314 439 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 MPEG1Q2M385 716 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 TMEM52BQ4KMG9 183 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 SPIN4Q56A73 249 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 PRAMEF14Q5SWL7 426 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 AGBL4Q5VU57 503 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 PRAMEF13Q5VWM6 474 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 KCTD8Q6ZWB6 473 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 VN1R5Q7Z5H4 357 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 ZBTB46Q86UZ6 589 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 CYP4Z1Q86W10 505 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 ZCCHC7Q8N3Z6 543 aaKnown RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 DNAJC5GQ8N7S2 189 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 DCUN1D5Q9BTE7 237 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 NPLQ9BXD5 320 aaPredicted RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 MKRN2Q9H000 416 aaKnown RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 NKX2-4Q9H2Z4 354 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 FAM120CQ9NX05 1096 aaKnown RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 RSL24D1Q9UHA3 163 aaKnown RBP10.2□□□□□ -0.78
CUX1-217ENST00000558836 MAP4K5Q9Y4K4 846 aa10.2□□□□□ -0.78
CUX1-217ENST00000558836 KIAA1549LQ6ZVL6 1849 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 SERTM1A2A2V5 107 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 PTGES3LE9PB15 166 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 SERPIND1P05546 499 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 EPHA2P29317 976 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 OR1E2P47887 323 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 ZNF763Q0D2J5 394 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 CAMK2GQ13555 558 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 MAP7Q14244 749 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 CST6Q15828 149 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 HIST2H2ACQ16777 129 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 DPY19L1Q2PZI1 675 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 CTU2Q2VPK5 515 aaKnown RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 C11orf91Q3C1V1 193 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 KCTD21Q4G0X4 260 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 HIST2H2AA3Q6FI13 130 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 SYCE2Q6PIF2 218 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 TMIGD1Q6UXZ0 262 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 GPR141Q7Z602 305 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 DSG4Q86SJ6 1040 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 VPS37AQ8NEZ2 397 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 MAGEB10Q96LZ2 347 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 F2RL3Q96RI0 385 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 FAF1Q9UNN5 650 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 GPR34Q9UPC5 381 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 ZNF451Q9Y4E5 1061 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 C1orf226A1L170 272 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 WASHC1A8K0Z3 465 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 PPM1DO15297 605 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 IL3P08700 152 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 HPCAL1P37235 193 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 GSSP48637 474 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 ALDH9A1P49189 494 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 RGNQ15493 299 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 GPR107Q5VW38 600 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 CPZQ66K79 652 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 WASH2PQ6VEQ5 465 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 R3HCC1LQ7Z5L2 792 aaKnown RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 ADCK2Q7Z695 626 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 ARL10Q8N8L6 244 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 DNAJB8Q8NHS0 232 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 ZFP90Q8TF47 636 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 C16orf78Q8WTQ4 265 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 JPH3Q8WXH2 748 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 UCN3Q969E3 161 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 RAD51AP1Q96B01 352 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 DPEP2Q9H4A9 486 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 GDE1Q9NZC3 331 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 TMEFF2Q9UIK5 374 aaPredicted RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 SAMD4AQ9UPU9 718 aaKnown RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 SNX8Q9Y5X2 465 aa10.19□□□□□ -0.78
CUX1-217ENST00000558836 SNRNP200O75643 2136 aaKnown RBP10.19□□□□□ -0.78
CUX1-217ENST00000558836 ATG2AQ2TAZ0 1938 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 OR52A4PA6NMU1 304 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 VEGFDO43915 354 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 BMP10O95393 424 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 C7P10643 843 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 PTGER1P34995 402 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 ASMTP46597 345 aa10.18□□□□□ -0.78
CUX1-217ENST00000558836 RPS26P62854 115 aaKnown RBP10.18□□□□□ -0.78
CUX1-217ENST00000558836 PAGE2BQ5JRK9 111 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms