RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 VIPP01282 170 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 RGNQ15493 299 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 MICAQ29983 383 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 IFI44LQ53G44 452 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CCSAPQ6IQ19 270 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 GDPD3Q7L5L3 318 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 NLRP8Q86W28 1048 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 ADGRG2Q8IZP9 1017 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 PCSK9Q8NBP7 692 aaKnown RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 FAM83FQ8NEG4 500 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 IL17RDQ8NFM7 739 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 MAPKAP1Q9BPZ7 522 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 TSEN34Q9BSV6 310 aaKnown RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 TTPALQ9BTX7 342 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 TPK1Q9H3S4 243 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CCDC177Q9NQR7 707 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 IMPAD1Q9NX62 359 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 EHD3Q9NZN3 535 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 NDUFAF4Q9P032 175 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 ARRDC5A6NEK1 342 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 PDZK1P1A8MUH7 402 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CENPBD1B2RD01 187 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 KMOO15229 486 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CCNKO75909 580 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CD72P21854 359 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CCR7P32248 378 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 PCDH1Q08174 1060 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 ACSM2AQ08AH3 577 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CHIT1Q13231 466 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 MBTPS1Q14703 1052 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 SF3B4Q15427 424 aaKnown RBP eCLIP15.7■□□□□ 0.13e-8■■■■■ 35.5
SHMT2-232ENST00000557487 CPTPQ5TA50 214 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 ACSM2BQ68CK6 577 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 THOC7Q6I9Y2 204 aaKnown RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 GDPGP1Q6ZNW5 385 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 ALG14Q96F25 216 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 DPH2Q9BQC3 489 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 CLSTN3Q9BQT9 956 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 DYRK4Q9NR20 520 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 WBP11Q9Y2W2 641 aaKnown RBP15.7■□□□□ 0.1
SHMT2-232ENST00000557487 LOC100506127A0A0U1RQW1 187 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 CXorf51AA0A1B0GTR3 108 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 PSMD11O00231 422 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 NBNO60934 754 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 IGSF6O95976 241 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 IFNA14P01570 189 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SRPRAP08240 638 aaKnown RBP15.69■□□□□ 0.1
SHMT2-232ENST00000557487 TRAPPC2P0DI81 140 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 TRAPPC2BP0DI82 140 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 PIPP12273 146 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SPNP16150 400 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 GTF2E2P29084 291 aaKnown RBP15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SERPINA4P29622 427 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 HNF4AP41235 474 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 CDC42P60953 191 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 IFITM2Q01629 132 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 ST3GAL4Q11206 333 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 RTP2Q5QGT7 225 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 RSBN1Q5VWQ0 802 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-232ENST00000557487 NPAS3Q8IXF0 933 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SLC5A8Q8N695 610 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 WDR20Q8TBZ3 569 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SPPL2AQ8TCT8 520 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 COQ8BQ96D53 544 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 C11orf24Q96F05 449 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-232ENST00000557487 CEP19Q96LK0 163 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 SLC30A2Q9BRI3 323 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 TMEM175Q9BSA9 504 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 EBPLQ9BY08 206 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 OR51E2Q9H255 320 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 GKN1Q9NS71 199 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 ZNF226Q9NYT6 803 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 ZNF221Q9UK13 617 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 DUSP12Q9UNI6 340 aa15.69■□□□□ 0.1
SHMT2-232ENST00000557487 CCRL2O00421 344 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 RNASET2O00584 256 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 UGT2B17O75795 530 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 STSP08842 583 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 LAMP1P11279 417 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CKBP12277 381 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CSKP41240 450 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC15A1P46059 708 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CRYBA2P53672 197 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 IRF8Q02556 426 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CDH18Q13634 790 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 STARD3Q14849 445 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC8B1Q6J4K2 584 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TPRG1Q6ZUI0 275 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 GALNT10Q86SR1 603 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC44A2Q8IWA5 706 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CLECL1Q8IZS7 167 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC7A5P1Q8MH63 180 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CAPSLQ8WWF8 208 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 ERLEC1Q96DZ1 483 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TRNT1Q96Q11 434 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TRMT13Q9NUP7 481 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 GPR83Q9NYM4 423 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC22A14Q9Y267 594 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 RBMX2Q9Y388 322 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CENPFP49454 3210 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms