RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HECAQ9UBI9 543 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-226ENST00000556825 D6RAR5 112 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 TRUB2O95900 331 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 GLUD1P00367 558 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 RB1P06400 928 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 ARP10275 920 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 WARSP23381 471 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CD79BP40259 229 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 PTGFRP43088 359 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 NR0B1P51843 470 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 ATXN1P54253 815 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 OPCMLQ14982 345 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 ACER2Q5QJU3 275 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SH3PXD2AQ5TCZ1 1133 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 KANK2Q63ZY3 851 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 TMEM270Q6UE05 265 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CYHR1Q6ZMK1 362 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 MOB2Q70IA6 237 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CYP4Z1Q86W10 505 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CENPLQ8N0S6 344 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SLC34A3Q8N130 599 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 ACVR1CQ8NER5 493 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CREB3L4Q8TEY5 395 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 LENG9Q96B70 501 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 COL21A1Q96P44 957 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SSX3Q99909 188 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 PRR14Q9BWN1 585 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 TDRD3Q9H7E2 651 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 TREM2Q9NZC2 230 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 GPR160Q9UJ42 338 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 PPIEQ9UNP9 301 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 LOC102723532A0A0G2JNH3 316 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 A0A1B0GVI7 797 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 C9JVG2 144 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 KCNK1O00180 336 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 PSMD9O00233 223 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 ATP6AP2O75787 350 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 MT-CO1P00395 513 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SLC2A2P11168 524 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 MUC1P15941 1255 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 GGT1P19440 569 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SLC19A1P41440 591 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SF3A2Q15428 464 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 TAF1AQ15573 450 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 NKG7Q16617 165 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CD276Q5ZPR3 534 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 HAGHLQ6PII5 290 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 NUDT18Q6ZVK8 323 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 DDX53Q86TM3 631 aaKnown RBP13.35□□□□□ -0.27
SHMT2-226ENST00000556825 NIM1KQ8IY84 436 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 DAW1Q8N136 415 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 FAM86B1Q8N7N1 296 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 NANOGP1Q8N7R0 232 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 APH1BQ8WW43 257 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SFXN2Q96NB2 322 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CCM2Q9BSQ5 444 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 CNPPD1Q9BV87 410 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 POMKQ9H5K3 350 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 RASSF1Q9NS23 344 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 PLCXD1Q9NUJ7 323 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 SEC14L3Q9UDX4 400 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 POMT2Q9UKY4 750 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 BTRCQ9Y297 605 aa13.35□□□□□ -0.27
SHMT2-226ENST00000556825 UBA6A0AVT1 1052 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L15C9J2P7 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L13C9JLJ4 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L11C9JVI0 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L18D6R9N7 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L22D6RA61 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L17D6RBQ6 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L19D6RCP7 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L20D6RJB6 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 C6orf229H3BNL8 230 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 CLDN4O14493 209 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 CDC123O75794 336 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-226ENST00000556825 KDM4BO94953 1096 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 LSM8O95777 96 aaKnown RBP13.34□□□□□ -0.27
SHMT2-226ENST00000556825 EDN3P14138 238 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 RHCEP18577 417 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 DDX6P26196 483 aaKnown RBP eCLIP13.34□□□□□ -0.273e-6■□□□□ 9.6
SHMT2-226ENST00000556825 SNRPEP62304 92 aaKnown RBP13.34□□□□□ -0.27
SHMT2-226ENST00000556825 USP17L24Q0WX57 530 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 TARBP2Q15633 366 aaKnown RBP13.34□□□□□ -0.27
SHMT2-226ENST00000556825 XKR9Q5GH70 373 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 FAM74A1Q5RGS3 127 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 NADSYN1Q6IA69 706 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 ENPP6Q6UWR7 440 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 ATCAYQ86WG3 371 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 EFHBQ8N7U6 833 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 ZNF606Q8WXB4 792 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 C3orf30Q96M34 536 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 MFSD14AQ96MC6 490 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 RNF157Q96PX1 679 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 MAP3K3Q99759 626 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 CDCP1Q9H5V8 836 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 AKTIPQ9H8T0 292 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 ACTR8Q9H981 624 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 SLC39A10Q9ULF5 831 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 COL1A2P08123 1366 aa13.34□□□□□ -0.27
SHMT2-226ENST00000556825 C7orf66A4D0T2 115 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms