RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 RFLNAQ6ZTI6 216 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 Q6ZVU0 165 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 AHSA2Q719I0 299 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 TUBA1AQ71U36 451 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 GAREM2Q75VX8 874 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 DDX53Q86TM3 631 aaKnown RBP6.75□□□□□ -1.33
TDP1-213ENST00000555880 TRIM74Q86UV6 250 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 TRIM73Q86UV7 250 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 RAVER1Q8IY67 606 aaKnown RBP6.75□□□□□ -1.33
TDP1-213ENST00000555880 RNF175Q8N4F7 328 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 C1orf52Q8N6N3 182 aaKnown RBP6.75□□□□□ -1.33
TDP1-213ENST00000555880 WDR20Q8TBZ3 569 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 SPPL2AQ8TCT8 520 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 AUTS2Q8WXX7 1259 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 HPS1Q92902 700 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 CXorf40BQ96DE9 158 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 HRASLS5Q96KN8 279 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 DACH2Q96NX9 599 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 ALPK1Q96QP1 1244 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 ZNF300Q96RE9 604 aaPredicted RBP6.75□□□□□ -1.33
TDP1-213ENST00000555880 COPS4Q9BT78 406 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 DOHHQ9BU89 302 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 ITPAQ9BY32 194 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 GABARAPL3Q9BY60 117 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 MROQ9BYG7 248 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 ENOPH1Q9UHY7 261 aa6.75□□□□□ -1.33
TDP1-213ENST00000555880 HTTP42858 3142 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 COL4A6Q14031 1691 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PLXNA2O75051 1894 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 OR2A25A4D2G3 310 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 KRT87PA6NCN2 255 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TMEM247A6NEH6 219 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 CLDN24A6NM45 220 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 ARHGEF33A8MVX0 844 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 NEDD8-MDP1E9PL57 170 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TNFRSF11BO00300 401 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TEX28O15482 410 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PRAMEF4O60810 478 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 IFNA14P01570 189 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 NTRK1P04629 796 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 ABCB1P08183 1280 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 PABPC1P11940 636 aaKnown RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 CD22P20273 847 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 EFNA1P20827 205 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 ACVR2AP27037 513 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TPP2P29144 1249 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 AQP1P29972 269 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 RRM2P31350 389 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TIA1P31483 386 aaKnown RBP eCLIP6.74□□□□□ -1.33
TDP1-213ENST00000555880 CRATP43155 626 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 MASP1P48740 699 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PRIM2P49643 509 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 DMC1Q14565 340 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 OXA1LQ15070 435 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 RGNQ15493 299 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 SMN1Q16637 294 aaKnown RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 CYP2A13Q16696 494 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 HIST2H2ACQ16777 129 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 HKDC1Q2TB90 917 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PAGE2BQ5JRK9 111 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PERM1Q5SV97 790 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.74□□□□□ -1.332e-6■■■■□ 26.1
TDP1-213ENST00000555880 C10orf62Q5T681 223 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 UBE2UQ5VVX9 321 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 PRAMEF9Q5VWM5 478 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 CNKSR3Q6P9H4 555 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 CCDC149Q6ZUS6 474 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 GPR155Q7Z3F1 870 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 ANKRD33Q7Z3H0 272 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 CAMKMTQ7Z624 323 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 DEPDC4Q8N2C3 294 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TRAM1L1Q8N609 369 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 GPR156Q8NFN8 814 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 OR6Q1Q8NGQ2 317 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 DYNC2LI1Q8TCX1 351 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 ZFP90Q8TF47 636 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 SCAMP4Q969E2 229 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 LGALS12Q96DT0 336 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TOX2Q96NM4 488 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 MYOCQ99972 504 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 BHLHE41Q9C0J9 482 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 ZNF556Q9HAH1 456 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 TMEM39AQ9NV64 488 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 SH3BP4Q9P0V3 963 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 STOX2Q9P2F5 926 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 AASSQ9UDR5 926 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 MBD1Q9UIS9 605 aaPredicted RBP6.74□□□□□ -1.33
TDP1-213ENST00000555880 TMPRSS11EQ9UL52 423 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 ATP11BQ9Y2G3 1177 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 KCNE2Q9Y6J6 123 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 MYOFQ9NZM1 2061 aa6.74□□□□□ -1.33
TDP1-213ENST00000555880 A0A1W2PRU2 124 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 C1orf226A1L170 272 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 KRBA1A5PL33 1030 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 GABRR3A8MPY1 467 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 UPK3BL1B0FP48 263 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 WASH3PC4AMC7 463 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 UPK3BL2E5RIL1 263 aa6.73□□□□□ -1.33
TDP1-213ENST00000555880 RNASET2O00584 256 aaKnown RBP6.73□□□□□ -1.33
TDP1-213ENST00000555880 TSPAN6O43657 245 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms