RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ALOX12BO75342 701 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 RDH16O75452 317 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 KRT38O76015 456 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 KLHL18O94889 574 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 C1GALT1C1LP0DN25 315 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 MYBL2P10244 700 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 MTHFD2P13995 350 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 EPORP19235 508 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 AHRP35869 848 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 MSH2P43246 934 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 AGTR2P50052 363 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 SERPINB9P50453 376 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 PGDP52209 483 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 RGS1Q08116 209 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 PWP1Q13610 501 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 RBBP5Q15291 538 aaKnown RBP13□□□□□ -0.33
SHMT2-219ENST00000555563 FAM83EQ2M2I3 478 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 PRAMEF9Q5VWM5 478 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 ATG9BQ674R7 924 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 ASB18Q6ZVZ8 466 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 LRRC70Q7Z2Q7 622 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 LAPTM4BQ86VI4 370 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 AFAP1L2Q8N4X5 818 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 CLEC1AQ8NC01 280 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 RHEBL1Q8TAI7 183 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 NACC2Q96BF6 587 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 GPR78Q96P69 363 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 NUDT9Q9BW91 350 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 TXLNGYQ9BZA5 131 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 TGIF2Q9GZN2 237 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 MLXIPLQ9NP71 852 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 NAALAD2Q9Y3Q0 740 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 TNRC6AQ8NDV7 1962 aaKnown RBP13□□□□□ -0.33
SHMT2-219ENST00000555563 TRIM49D1C9J1S8 452 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 SLC28A2O43868 658 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 JRKO75564 520 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 KLHL2O95198 593 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 BMP10O95393 424 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 B3GALT4O96024 378 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 IGHEP01854 428 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF888P0CJ79 500 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-219ENST00000555563 ACPPP15309 386 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 CD22P20273 847 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 GCAP28676 217 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 EFNA3P52797 238 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 HYAL2Q12891 473 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 RAPSNQ13702 412 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 HERC3Q15034 1050 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 ACAP2Q15057 778 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 TUBB8Q3ZCM7 444 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 DEFB134Q4QY38 66 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 COLEC12Q5KU26 742 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 KLC3Q6P597 504 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 PLD6Q8N2A8 252 aaKnown RBP12.99□□□□□ -0.33
SHMT2-219ENST00000555563 OR11G2Q8NGC1 345 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 CREB3L4Q8TEY5 395 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 C8orf44Q96CB5 159 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 CAPS2Q9BXY5 557 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 CD244Q9BZW8 370 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 SLC6A16Q9GZN6 736 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 EPB41L4BQ9H329 900 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 EHD1Q9H4M9 534 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 GPR83Q9NYM4 423 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 COPG2Q9UBF2 871 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 PIEZO2Q9H5I5 2752 aa12.99□□□□□ -0.33
SHMT2-219ENST00000555563 CCDC189A1A4V9 331 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 SYCE1LA8MT33 242 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 C4orf51C9J302 202 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 MAP2K7O14733 419 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 CLGNO14967 610 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 SUV39H1O43463 412 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 GALR3O60755 368 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 H2AFYO75367 372 aaKnown RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 GFAPP14136 432 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 ALOX12P18054 663 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 CXCR2P25025 360 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 CNTFP26441 200 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 HNF4AP41235 474 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 XCR1P46094 333 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 EMP2P54851 167 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 DOC2AQ14183 400 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 SETDB1Q15047 1291 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 XKR6Q5GH73 641 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 TECRLQ5HYJ1 363 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 FAAH2Q6GMR7 532 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 ADNP2Q6IQ32 1131 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 TMIGD1Q6UXZ0 262 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 ABHD13Q7L211 337 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 KRT78Q8N1N4 520 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 EIF1ADQ8N9N8 165 aaKnown RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 TRPV3Q8NET8 790 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 OR5T3Q8NGG3 340 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 OR51Q1Q8NH59 317 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 UTP15Q8TED0 518 aaKnown RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 WDR34Q96EX3 536 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 PTCD3Q96EY7 689 aaKnown RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 RBCK1Q9BYM8 510 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 VN1R1Q9GZP7 353 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 AICDAQ9GZX7 198 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 KLHL31Q9H511 634 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms